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Commits on Sep 14, 2023

• Harmony 64bit (scverse#2655)

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• Add note to the groups arg in rank_genes_groups() (scverse#2657)

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Commits on Sep 13, 2023

• Update __init__.py (scverse#2664)

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Commits on Sep 8, 2023

• Start 1.9.6 (scverse#2660)

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• Remove use of AnnData constructor dtype kwarg (scverse#2658)

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Commits on Sep 5, 2023

• Fix citations in MyST (scverse#2654)

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• Highlight distance matrix in docs of sc.pp.neighbors (scverse#2640)

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• Fix and deprecate RAPIDS implementations in favor of rapids_singlecell (scverse#2648)

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• [pre-commit.ci] pre-commit autoupdate (scverse#2651)

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Commits on Sep 4, 2023

• Enforce stable cluster order in notebook test (scverse#2650)

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• Reorganize plotting test outputs (scverse#1772)

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Commits on Aug 31, 2023

• Make neighbors work based on KNeighborsTransformer-compatible APIs (scverse#2536)

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Commits on Aug 29, 2023

• [pre-commit.ci] pre-commit autoupdate (scverse#2642)

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Commits on Aug 25, 2023

• Back to scanpydoc (scverse#2561)

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Commits on Aug 24, 2023

• Prepare 1.9.4 release (scverse#2639)

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• allow sc.pp.subsample in backed mode when returning a copy (scverse#2624)

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• Improve n_jobs docs (scverse#2637)

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Commits on Aug 22, 2023

• changed hvg with PR to work with numba (scverse#2612)

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• [pre-commit.ci] pre-commit autoupdate (scverse#2631)

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Commits on Aug 21, 2023

• Dask PCA support (scverse#2563)

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Commits on Aug 17, 2023

• [pre-commit.ci] pre-commit autoupdate (scverse#2617)

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Commits on Aug 15, 2023

• changed pepy badge (scverse#2618)

  Intron7

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Commits on Aug 14, 2023

• Fix key name in documentation (scverse#2615)

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• Restore link checking in docs (partially reverts scverse#2220) (scverse#2614)

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• Improve support for n_pcs if bigger than settings.N_PCS (scverse#2610)

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• Make helpers work with dask (scverse#2595)

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Commits on Aug 9, 2023

• fixed get.rank_genes_groups_df with logreg (scverse#2601)

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Commits on Aug 8, 2023

• Unify needs() syntax (scverse#2604)

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• [pre-commit.ci] pre-commit autoupdate (scverse#2602)

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Commits on Aug 7, 2023

• Fixed wrong order for groups with logreg (scverse#2589)

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• Simplify tests (scverse#2575)

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Commits on Aug 4, 2023

• 1.9.4 release notes (scverse#2594)

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• Use faster default Python version for jobs (scverse#2596)

  flying-sheep

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• switch to pytestmark (scverse#2593)

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• Layers support for PCA and regress_out (scverse#2588)

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