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add installation guidance
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.gitignore

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# Cython debug symbols
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cython_debug/
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README.md

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| FEAST | R | [paper](https://doi.org/10.1093/bib/bbab034) |
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| sctransform | R | [paper](https://doi.org/10.1186/s13059-019-1874-1) |
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#### Cell clustering
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| Name | Language | Reference |
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| :---: | :---: | :---: |
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| Seurat | R | [paper](https://doi.org/10.1016/j.cell.2021.04.048) |
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| CIDR | R | [paper](https://doi.org/10.1186/s13059-017-1188-0) |
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| SC3s | Python | [paper](https://doi.org/10.1186/s12859-022-05085-z) |
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### spatial transcriptomics
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#### Feature selection
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| Name | Language | Reference |
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| :---: | :---: | :---: |
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| SpatialDE |Python| [paper](https://doi.org/10.1038/nmeth.4636v) |
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| SPARK-X | R | [paper](https://doi.org/10.1186/s13059-021-02404-0) |
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#### domain detetcion
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| Name | Language | Reference |
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| :---: | :---: | :---: |
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| SpaGCN | Python | [paper](https://doi.org/10.1038/s41592-021-01255-8) |
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| stLearn | Python | [paper](https://doi.org/10.1101/2020.05.31.125658) |
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## Requirements
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### R packages
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This benchmark is written in Python and call R functions through `rpy2`. If you want to use some methods implemented with R language, please install the corresponding R packages.
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### Python packages
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- anndata>=0.8.0
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- numpy>=1.21.6
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- scanpy>=1.9.1
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- SpatialDE>=1.1.3
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## Installation
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Coming soon.
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```commandline
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git clone https://github.com/ToryDeng/FeatureSelectionBenchmarks
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cd FeatureSelectionBenchmarks/
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python3 setup.py install --user
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```
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## Tutorial
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Coming soon.
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