Update of UMLS
Prerequisites:
- Created UMLS schema.
- Working directory UMLS.
- Run create_source_tables.sql
- Download umls-YYYYAB-full.zip (for example umls-2016AB-full.zip) from http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html.
- Unpack MRCONSO.RRF.aa.gz MRCONSO.RRF.ab.gz MRHIER.RRF.aa.gz MRHIER.RRF.ab.gz MRHIER.RRF.ac.gz MRMAP.RRF.gz MRSMAP.RRF.gz MRSAT.RRF.aa.gz MRSAT.RRF.ab.gz MRSAT.RRF.ac.gz MRSAT.RRF.ad.gz
then run in console: --gunzip *.gz --cat MRCONSO.RRF.aa MRCONSO.RRF.ab > MRCONSO.RRF --cat MRHIER.RRF.aa MRHIER.RRF.ab MRHIER.RRF.ac > MRHIER.RRF --cat MRSAT.RRF.aa MRSAT.RRF.ab MRSAT.RRF.ac MRSAT.RRF.ad > MRSAT.RRF
- Load them into tables using control files of the same name