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Commits on Mar 1, 2022

• added the second minimap2 paper

  lh3

  committed
  e018cae

• removed travis CI

  lh3

  committed
  7c02742

• Fix indentation

  

  cjw85

  authored and

  lh3

  committed
  a41f5d1

• fix undefined variable

  

  cjw85

  authored and

  lh3

  committed
  ed3d0eb

• Build mappy via Makefile and libminimap2.a

  

  cjw85

  authored and

  lh3

  committed
  e6d166a

Commits on Dec 26, 2021

• typo on simde

  lh3

  committed
  06fedaa

• Release minimap2-2.24 (r1122)

  lh3

  committed
  fe35e67

• r1121: change bw_long to bw if bw is longer

  Show description for e25aa5e
  lh3

  committed
  e25aa5e

• r1121: updated obsolete settings in manpage

  Show description for 3bde345
  lh3

  committed
  3bde345

Commits on Dec 25, 2021

• r1119: fixed a typo in the new chaining code

  Show description for 36942ff
  lh3

  committed
  36942ff

Commits on Dec 24, 2021

• r1118: use -r1k,100k for asm* modes

  lh3

  committed
  d3a89d3

Commits on Nov 24, 2021

• r1117: added --no-hash-name for deterministic

  lh3

  committed
  c8f0a35

Commits on Nov 21, 2021

• r1116: cut long chains at weak points

  lh3

  committed
  fcaadc2

Commits on Nov 20, 2021

• r1115: prepare for chain breaking

  lh3

  committed
  db37fc4

Commits on Nov 19, 2021

• r1114: retain more candidate inversion alignments

  lh3

  committed
  a8f1fa8

• r1112: added --print-chains for debugging

  lh3

  committed
  b276772

Commits on Nov 18, 2021

• Release minimap2-2.23 (r1111)

  lh3

  committed
  d0cff3e

Commits on Oct 11, 2021

• r1110: default --cap-kalloc=1g; test more inv

  Show description for ac33463
  lh3

  committed
  ac33463

Commits on Oct 5, 2021

• r1109: disable chain_skip_scale by default

  Show description for 546623d
  lh3

  committed
  546623d

Commits on Oct 4, 2021

• r1108: fixed missing inversions for lh3#816 and lh3#806

  lh3

  committed
  39bdd45

Commits on Oct 1, 2021

• added --chain-skip-scale

  lh3

  committed
  aefa2c0

• updated manuscript

  lh3

  committed
  7ee62da

Commits on Aug 15, 2021

• r1105: avoid long running time occasionally (lh3#771)

  Show description for 05a8a45
  lh3

  committed
  05a8a45

Commits on Aug 8, 2021

• fixed typos

  lh3

  committed
  cc14d1a

Commits on Aug 7, 2021

• removed one extra sentence

  lh3

  committed
  bb3048b

• improved manuscript

  lh3

  committed
  5113ca2

• Release minimap2-2.22 (r1101)

  lh3

  committed
  7358a1e

• Merge remote-tracking branch 'remotes/origin/master'

  lh3

  committed
  32f5529

• a different ending sentence

  lh3

  committed
  a05edfa

• finished the first draft

  lh3

  committed
  8e81145

• finished results

  lh3

  committed
  e37f5ff

• r1094: for --split-prefix update max_dp at the end

  lh3

  committed
  8a1d52b

Commits on Aug 6, 2021

• expose mapQ threshold to command line of pafcmp

  lh3

  committed
  f7271a7

• minimap2 update manuscript

  lh3

  committed
  70393eb

Commits on Aug 5, 2021

• added pafcmp

  lh3

  committed
  9d049f0

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