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Issues list

change relative path to absolute path
#103 opened Dec 16, 2015 by yunfeiguo
combine all VCF correction scripts into one in runVARSCAN
#80 opened Jul 8, 2015 by yunfeiguo
add option to bypass chromosome name check enhancement
#83 opened Aug 4, 2015 by yunfeiguo
rename final file in an explicit way enhancement
#84 opened Aug 13, 2015 by yunfeiguo
Can't exec "/bin/sh": Argument list too long
#90 opened Sep 12, 2015 by yunfeiguo
add option to specify memory for samtools sort
#92 opened Sep 14, 2015 by yunfeiguo
add internal usage tracking function enhancement
#93 opened Sep 16, 2015 by yunfeiguo
add more verbose output to seqmule parallel.pm error
#94 opened Sep 22, 2015 by yunfeiguo
add requirement for using '.fasta' or '.fa' as suffix for reference genome
#96 opened Oct 13, 2015 by yunfeiguo
add requirement for .dict for fasta reference (required by GATK).
#97 opened Oct 14, 2015 by yunfeiguo
2
remind users to use more memory for custom assembly (when number of contigs is large)
#98 opened Oct 19, 2015 by yunfeiguo
change behavior about sample name in bam
#99 opened Oct 19, 2015 by yunfeiguo
remove old avinput consensus generation in 'seqmule stats' enhancement
#59 opened Mar 12, 2015 by yunfeiguo 1.2.0 release
@yunfeiguo
add automatic logging function
#102 opened Dec 16, 2015 by yunfeiguo
add more examples for --sge and -nc options
#104 opened Dec 16, 2015 by yunfeiguo
consider improving Parallel.pm
#105 opened Dec 21, 2015 by yunfeiguo
add seqmule command to *.script and stderr enhancement
#112 opened Jan 27, 2016 by yunfeiguo
provide an option to let user convert BAM to FQ and then do normal analysis enhancement
#113 opened Jan 27, 2016 by yunfeiguo
@yunfeiguo
automatically extract error messages from log folder
#133 opened May 5, 2016 by yunfeiguo
automatically split fastq for parallel alignment
#134 opened May 5, 2016 by yunfeiguo
Venn diagram is not downloaded
#135 opened May 10, 2016 by clwan
3
samtool variants calling error
#138 opened May 18, 2016 by seungyeul
5
fix coverage calculation issue
#140 opened May 21, 2016 by yunfeiguo
Default target region bed file in test run
#146 opened Aug 9, 2016 by rashidma
28
ERROR: command failed
#189 opened Apr 28, 2023 by chenbiaobang
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