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updated README.md
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README.md

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@@ -12,9 +12,9 @@ Please cite the following publication if Samasy is used for an academic project:
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## Getting Started
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## Best Method: Docker
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### Best and Easiest Method: Docker
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Samasy is now dockerized, making installation and running dead simple. To get started, install [docker](https://www.docker.com/) and then run the following commands in your terminal:
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Samasy is now dockerized, making installation and running super simple simple. To get started, install [docker](https://www.docker.com/) and then run the following commands in your terminal:
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```bash
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docker # To test that docker is installed properly, should display docker usage and commands
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docker pull ccario83/samasy # To get the samasy docker image
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That's it!
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## Manual Method
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### Install RVM and Ruby 2.0.0
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### Manual Method
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#### Install RVM and Ruby 2.0.0
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This software was written and tested with ruby 2.0.0. We recommend installing this version with rvm if you have a another verison on your system:
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```
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$ gpg --keyserver hkp://keys.gnupg.net --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3
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$ rvm install 2.0.0
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$ rvm use 2.0.0
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```
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### Install System Libraries and Ruby Gems (For a Debian based system)
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#### Install System Libraries and Ruby Gems (For a Debian based system)
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```
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$ sudo apt-get install git libsqlite3-dev # brew install git sqlite3 on a Mac
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$ gem install bundler
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```
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### Install and Run the Application (3-steps)
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#### Install and Run the Application (3-steps)
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```
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$ git clone https://github.com/wittelab/samasy.git
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$ cd samasy && bundle
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The interface showing the *Batch view*:
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![Image of Interface](interface.png)
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## Lightweight 96-well Plate Labeling and/or Color Coding
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## BONUS: Custom coloring of 96-well sample information
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You can use the code gist below to print out 96-well plate maps for your lab notebook, or even to place underneath plates to facilitate pipetting!
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See: https://gist.github.com/ccario83/2fc713571e7ddab01486a7f487adeafb
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![Plate Coloring Gist](example/lightweight.png)

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