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A tool that allows to get UMI counts from a single cell protein assay

hoohm.github.io/cite-seq-count/

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LICENSE.txt		LICENSE.txt
README.md		README.md
mkdocs.yml		mkdocs.yml
setup.py		setup.py

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CITE-seq-Count

A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.

IMPORTANT NEWS

There was a major bug in version 1.3.4 of CITE-seq-Count. The results where in read counts and not in UMI counts.

This is fixed in version 1.4.0 or above. Please rerun your data as this might provide a cleaner result for your data.

Here is the website referencing the wetlab protocols needed https://cite-seq.com/

Installation

pip install CITE-seq-Count==1.4.4

The official documentation can be found here

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A tool that allows to get UMI counts from a single cell protein assay

hoohm.github.io/CITE-seq-Count/

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