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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Local Library website written in Django; example for the MDN server-side development Django module: https://developer.mozilla.org/en-US/docs/Learn/Server-side/Django.
Structural variation caller using third generation sequencing
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Read-based phasing of genomic variants, also called haplotype assembly
Pipeline components for real-time phylodynamic analysis
Long read based human genomic structural variation detection with cuteSV
Find, circularise and annotate mitogenome from PacBio assemblies
Structural Variant Identification Method using Long Reads
Script to automatically create and run IGV snapshot batchscripts
pbsv - PacBio structural variant (SV) calling and analysis tools
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
The ARTIC field bioinformatics pipeline
FunGAP: fungal Genome Annotation Pipeline
A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
HiFi-based caller for highly similar paralogous genes
ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction
A pipeline for Bacterial Whole genome sequence data analysis
A pipeline for scaffolding a genome assembly using Hi-C