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Commits on Sep 5, 2019

• Add prevalence data in data/ folder

  

  Anita

  committed
  20af4ab

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Commits on Sep 4, 2019

• Add untested penalised complexity model.

  timcdlucas

  committed
  420183a

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• remove 2016

  timcdlucas

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  003c23a

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• Add sparsemvn package.

  timcdlucas

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  af7fdf6

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• Fix merge conflict

  timcdlucas

  committed
  a002261

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• Fix coords in3

  timcdlucas

  committed
  86027b5

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• Fix coords in2 .

  timcdlucas

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  c79d871

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Commits on Sep 2, 2019

• Install package if not yet installed. Add more comments

  

  Anita

  committed
  221ca47

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Commits on Aug 21, 2019

• Update Readme

  

  Anita

  committed
  2eefe74

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• A little bit of tidying

  

  Anita

  committed
  fdb69a9

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• add list of libs to README. We needed to send this to the organiser?

  timcdlucas

  committed
  9aab72a

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• Remove inla dep in model 1 and update priors in model2.

  timcdlucas

  committed
  5f2681a

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• Plot separate field as well.

  timcdlucas

  committed
  b95ada5

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• Seperate out incidence download and put data download at top.

  timcdlucas

  committed
  04df9ea

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Commits on Aug 20, 2019

• Download incidence data directly.

  timcdlucas

  committed
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Commits on Aug 17, 2019

• More mesh messing. Better size, but maybe slow for a workshop?

  timcdlucas

  committed
  ce609ff

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• More messing with mesh.

  timcdlucas

  committed
  25e43a2

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• Bit of info on inc data.

  timcdlucas

  committed
  cbc5485

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• Better mesh.

  timcdlucas

  committed
  8614666

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• Have a separate full pr data object so we can autoplot it still. Is this useful?

  timcdlucas

  committed
  fb6c8b6

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• remove log_point_sd. Was it left in by accident? An old iid effect?

  timcdlucas

  committed
  62c2935

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• Also sort its for 2 and 3.

  timcdlucas

  committed
  7e9db2c

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• Simplify iteration definition and increase its.

  timcdlucas

  committed
  620e690

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• A bit more looking at newly made data objects and a single plot.

  timcdlucas

  committed
  1c3c385

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• Add dynlib. I guess this makes it cross platform.

  timcdlucas

  committed
  7d3c11b

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Commits on Aug 16, 2019

• Use worldclim data at 5 minutes resolution. Fixes aknandi#4. Takes about 2 minutes to download (maybe an issue)

  

  Anita

  committed
  630f1f2

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• Read in Kenya shapefile for plotting

  

  Anita

  committed
  b48b947

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• Tidy variable names

  

  Anita

  committed
  58c8dcb

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• Specify priors in R code

  

  Anita

  committed
  5229f97

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• Add learning slope for prev2inc relationship. Fixes aknandi#1

  

  Anita

  committed
  c6baf8b

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• Tidy up a bit

  

  Anita

  committed
  c240a89

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• Add mean and uncertainty prediction for example 3

  

  Anita

  committed
  8b198d6

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• Write the third model to include incidence data. Still need to learn relationship

  

  Anita

  committed
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Commits on Aug 15, 2019

• Added TMB doc to the Readme. Fixes aknandi#8

  

  Anita

  committed
  f6d4afb

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• Include incidence data in the data preparation. Add csv in data/ folder

  

  Anita

  committed
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