GitHub - Zhihao-Huang/scDVA: An R shiny based tool used for single cell RNA-seq data visualization and analysis.

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scDNA

An R shiny based tool used for single cell RNA-seq data visualization and analysis.

Tutorial

For more details and basic usage see following tutorials:
User manual for scDVA

Example

A running demo of scDVA is on scDVA

Contact

Please contact us:
Ziyi Li: [email protected]
Zemin Zhang: [email protected]

Brief introduction

After you run the app.R, the page will look like this:

You can explore the gene expression and metadata information with tSNE(UMAP) plot, box plot, violin plot, bar plot or heatmap. You can also do in-silico FACS and calculate the differentially expressed genes in different groups.