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  • ECNU
  • Shanghai, China

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DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system

C++ 764 277 Updated Mar 5, 2025

voutcn / megahit

Ultra-fast and memory-efficient (meta-)genome assembler

C++ 644 136 Updated Apr 30, 2024

jenniferlu717 / Bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

C++ 303 52 Updated Feb 26, 2025

ncbi / amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

C++ 295 44 Updated Feb 21, 2025

lmrodriguezr / nonpareil

Estimate metagenomic coverage and sequence diversity

C++ 48 12 Updated Aug 2, 2024