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The second version of the Kraken taxonomic sequence classification system
Ultra-fast and memory-efficient (meta-)genome assembler
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Estimate metagenomic coverage and sequence diversity