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Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现
Statistical package in Python based on Pandas
RNAseq analysis notes from Ming Tang
Structural variation caller using third generation sequencing
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…
GTEx & TOPMed data production and analysis pipelines
A tool for generating consensus long-read assemblies for bacterial genomes
Long read based human genomic structural variation detection with cuteSV
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
pbsv - PacBio structural variant (SV) calling and analysis tools
Software program for checking sample matching for NGS data
A tool for somatic structural variant calling using long reads
HemTools: a collection of NGS pipelines and bioinformatic analyses
GWAS gold standards repository
MILTON: Disease prediction with biomarkers and augmented PheWAS analyses
Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.
filtering trio-based genetic variants in VCFs for clinical review
Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.
BAMixChecker: A fast and efficient tool for sample matching checkup