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12 stars written in R
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Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

R 452 223 Updated Nov 7, 2024

Differential analysis of RNA-Seq

R 305 95 Updated Jul 10, 2024

Personal Cancer Genome Reporter (PCGR)

R 256 48 Updated Dec 8, 2024

Make Picrust2 Output Analysis and Visualization Easier

R 117 14 Updated Dec 25, 2024

An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny

R 106 105 Updated Jun 30, 2020

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

R 67 21 Updated Apr 2, 2016

DNA copy number detection from off-target sequence data

R 30 10 Updated May 17, 2018

Expanded STR algorithm for Illumina sequencing data

R 23 8 Updated Sep 11, 2022

CNV detection tool for targeted NGS panel data

R 16 9 Updated Feb 28, 2022

CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data

R 12 12 Updated Aug 2, 2018

COITR — a novel algorithm for predicting externally visible traits of а child

R 2 Updated Aug 21, 2018