README.Rmd

---
output: github_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
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# My favorite R packages <img src='hex.png' align="right" height="240" />

* [Tidyverse](#tidyverse)
* [Visualization](#visualization)
  * [News geoms](#news-geoms)
  * [Themes](#themes)
  * [3D](#3d)
* [Spatial](#spatial)
* [Reporting](#reporting)
  * [Templates](#templates)
  * [Tables](#tables)
* [Data manipulation](#data-manipulation)
* [Statistics](#statistics)
  * [Exploratory data analysis](#exploratory-data-analysis)
  * [Tidymodel](#tidymodel)
  * [Networks and trees](#networks-and-trees)
  * [Time series](#time-series)
* [Programming](#programming)
* [Package developement](#package-developement)
* [Interactivity](#interactivity)
  * [Shiny](#shiny)
* [Web](#web)
  * [APIs](#apis)
  * [Mails](#mails)
* [Maths](#maths)
* [For biology](#for-biology)
* [Datasets](#datasets)

## Tidyverse

* **[dplyr](https://dplyr.tidyverse.org)** - A Grammar of Data Manipulation
* **[forcats](https://forcats.tidyverse.org)** - Tools for Working with Categorical Variables (Factors)
* **[ggplot2](https://ggplot2.tidyverse.org)** - Create Elegant Data Visualisations Using the Grammar of Graphics
* **[glue](https://glue.tidyverse.org)** - Interpreted String Literals
* **[lubridate](https://lubridate.tidyverse.org)** - Make Dealing with Dates a Little Easier
* **[magrittr](https://magrittr.tidyverse.org)** - A Forward-Pipe Operator for R
* **[purrr](https://purrr.tidyverse.org)** - Functional Programming Tools
* **[readr](https://readr.tidyverse.org)** - Read Rectangular Text Data
* **[readxl](https://readxl.tidyverse.org)** - Read Excel Files
* **[rvest](https://rvest.tidyverse.org)** - Easily Harvest (Scrape) Web Pages
* **[stringr](https://stringr.tidyverse.org)** - Simple, Consistent Wrappers for Common String Operations
* **[tibble](https://tibble.tidyverse.org)** - Simple Data Frames
  * [Putting square pegs in round holes: Using list-cols in your dataframe](https://www.rstudio.com/resources/videos/using-list-cols-in-your-dataframe/)
* **[tidyr](https://tidyr.tidyverse.org)** - Easily Tidy Data with 'spread()' and 'gather()' Functions

## Visualization

* **[aplot](https://github.com/YuLab-SMU/aplot)** - Decorate a 'ggplot' with Associated Information
* **[colorscale](https://github.com/dreamRs/colorscale)** - Create a Color Scale From a Single Color
* **[cowplot](https://wilkelab.org/cowplot/)** - Streamlined Plot Theme and Plot Annotations for 'ggplot2'
* **[esquisse](https://dreamrs.github.io/esquisse/)** - Explore and Visualize Your Data Interactively
* **[extrafont](https://github.com/wch/extrafont)** - Tools for Using Fonts
* **[factoextra](https://rpkgs.datanovia.com/factoextra)** - Extract and Visualize the Results of Multivariate Data Analyses
* **[geofacet](https://hafen.github.io/geofacet)** - 'ggplot2' Faceting Utilities for Geographical Data
* **[gganimate](https://gganimate.com)** - A Grammar of Animated Graphics
* **[gfont](https://dreamrs.github.io/gfonts/)** - Offline 'Google' Fonts for 'Markdown' and 'Shiny'
* **[ggExtra](https://github.com/daattali/ggExtra)** - Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
* **[ggfortify](https://github.com/sinhrks/ggfortify)** - Data Visualization Tools for Statistical Analysis Results
* **[gghighlight](https://yutannihilation.github.io/gghighlight)** - Highlight Lines and Points in 'ggplot2'
* **[ggnewscale](https://eliocamp.github.io/ggnewscale/)** - Multiple Fill and Color Scales in 'ggplot2'
* **[ggrepel](https://github.com/slowkow/ggrepel)** - Automatically Position Non-Overlapping Text Labels with 'ggplot2'
* **[ggvegan](https://gavinsimpson.github.io/ggvegan/)** - 'ggplot2' Plots for the 'vegan' Package 
* **[ggwrap](https://github.com/wilkox/ggwrap)** - Wrap A 'ggplot2' Plot Over Multiple Rows
* **[gridtext](https://wilkelab.org/gridtext/)** - Improved Text Rendering Support for 'Grid' Graphics
* **[hexSticker](https://github.com/GuangchuangYu/hexSticker)** - Create Hexagon Sticker in R
* **[patchwork](https://github.com/thomasp85/patchwork)** - The Composer of ggplots
* **[PlaneGeometry](https://cran.r-project.org/web/packages/PlaneGeometry/)** - Plane Geometry
* **[scales](https://scales.r-lib.org)** - Scale Functions for Visualization
* **[showtext](https://github.com/yixuan/showtext)** - Using Fonts More Easily in R Graphs
* **[magick](https://docs.ropensci.org/magick/)** - Advanced Graphics and Image-Processing in R
* **[rvg](https://github.com/davidgohel/rvg)** - R Graphics Devices for Vector Graphics Output

### News geoms

* **[ComplexUpset](https://github.com/krassowski/complex-upset)** - Create Complex UpSet Plots Using ggplot2 Components
* **[ganttrify](https://github.com/giocomai/ganttrify)** - Create beautiful Gantt charts with ggplot2
* **[ggbeeswarm](https://github.com/eclarke/ggbeeswarm)** - Categorical Scatter (Violin Point) Plots
* **[ggbump](https://github.com/davidsjoberg/ggbump)** - Bump Chart In GGplot
* **[ggchicklet](https://cinc.rud.is/web/packages/ggchicklet/)** - Create 'Chicklet' (Rounded Segmented Column) Charts
* **[ggecho](https://github.com/coolbutuseless/ggecho)** - GGplot Stat to Duplicate Elements
* **[ggfittext](https://wilkox.org/ggfittext/)** - Fit Text Inside a Box in 'ggplot2'
* **[ggforce](https://ggforce.data-imaginist.com)** - Accelerating 'ggplot2'
* **[gggibbous](https://github.com/mnbram/gggibbous)** - Moon Charts, a Pie Chart Alternative
* **[gghalves](https://github.com/erocoar/gghalves)** - Compose Half-Half Plots Using Your Favourite Geoms
* **[ggimage](https://github.com/GuangchuangYu/ggimage)** - Use Image in 'ggplot2'
* **[ggimg](https://github.com/statsmaths/ggimg)** - Graphics Layers for Plotting Image Data with 'ggplot2'
* **[ggmatrix](https://github.com/houyunhuang/ggmatrix)** - Fast processing of matrix heatmap
* **[ggpattern](https://coolbutuseless.github.io/package/ggpattern)** - Geoms with Patterns
* **[ggpointdensity](https://github.com/LKremer/ggpointdensity)** - A Cross Between a 2D Density Plot and a Scatter Plot
* **[ggpol](https://github.com/erocoar/ggpol)** - Visualizing Social Science Data with 'ggplot2'
* **[ggquadrilateral](https://github.com/const-ae/ggquadrilateral)** - Draw arbitrary quadrilaterals in 'ggplot2'
* **[ggridges](https://github.com/clauswilke/ggridges)** - Ridgeline Plots in 'ggplot2'
* **[ggsignif](https://github.com/const-ae/ggsignif)** - Significance Brackets for 'ggplot2'
* **[ggstance](https://github.com/lionel-/ggstance)** - Horizontal 'ggplot2' Components
* **[ggtext](https://github.com/clauswilke/ggtext)** - Improved text rendering support for ggplot2
* **[ggtexture](https://github.com/clauswilke/ggtextures)** - Drawing Textured Rectangles and Bars with grid and ggplot2
* **[ggupset](https://github.com/const-ae/ggupset)** - Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots
* **[ggwordcloud](https://lepennec.github.io/ggwordcloud/)** - A Word Cloud Geom for 'ggplot2'
* **[parttree](https://github.com/grantmcdermott/parttree)** - Simple functions for plotting 2D decision tree partition plots
* **[shadowtext](https://github.com/GuangchuangYu/shadowtext)** - Shadow Text Grob and Layer
* **[superheat](https://github.com/rlbarter/superheat)** - A Graphical Tool for Exploring Complex Datasets Using Heatmaps
* **[treemapify](http://wilkox.org/treemapify/)** - Draw Treemaps in 'ggplot2'
* **[waffle](https://github.com/hrbrmstr/waffle)** - Create Waffle Chart Visualizations
   * [Building Pictograms](https://rud.is/rpubs/building-pictograms.html), [Building Waffle Charts](https://rud.is/rpubs/building-waffle-charts.html)
* **[weather](https://github.com/dreamRs/weather)** - Weather Icons
* **[ungeviz](https://wilkelab.org/ungeviz/)** - Tools for visualizing uncertainty with ggplot2
  * [Visualizing uncertainty with hypothetical outcomes plots](https://resources.rstudio.com/rstudio-conf-2019/visualizing-uncertainty-with-hypothetical-outcomes-plots)


### Themes

* **[basetheme](https://github.com/KKPMW/basetheme)** - Themes for Base Graphics Plots
* **[bbplot](https://bbc.github.io/rcookbook/)** - Making ggplot Graphics In BBC News Style
* **[firatheme](https://github.com/vankesteren/firatheme)** - A ggplot2 theme using the Fira Sans font
* **[fishualize](https://nschiett.github.io/fishualize)** - Color Palettes Based on Fish Species
* **[gameofthrones](https://github.com/aljrico/gameofthrones)** - Palettes Inspired in the TV Show "Game of Thrones"
* **[ggexpanse](https://github.com/hrbrmstr/ggexpanse)** - Theme Elements Based On 'The Expanse'
* **[ggdark](https://github.com/nsgrantham/ggdark)** - Dark Mode for 'ggplot2' Themes
* **[ggpomological](https://github.com/gadenbuie/ggpomological)** - Pomological plot themes for ggplot2
* **[ggpubr](https://rpkgs.datanovia.com/ggpubr/)** - 'ggplot2' Based Publication Ready Plots
* **[ggsci](https://nanx.me/ggsci/)** - Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
* **[ggtech](https://github.com/ricardo-bion/ggtech)** - ggplot2 tech themes and scales
* **[ggthemes](https://jrnold.github.io/ggthemes/)** - Extra Themes, Scales and Geoms for 'ggplot2'
* **[ggthemr](https://github.com/cttobin/ggthemr)** - Themes for ggplot2
* **[harrypotter](https://github.com/aljrico/harrypotter)** - Palettes Generated from All "Harry Potter" Movies
* **[hrbrthemes](https://hrbrmstr.github.io/hrbrthemes/)** - Additional Themes, Theme Components and Utilities for 'ggplot2'
* **[LaCroixColoR](https://github.com/johannesbjork/LaCroixColoR)** - LaCroix Water Color Palettes
* **[nationalparkcolors](https://github.com/katiejolly/nationalparkcolors)** - National Park Inspired Color Schemes
* **[NineteenEightyR](https://github.com/m-clark/NineteenEightyR)** - 198R
* **[paletteer](https://emilhvitfeldt.github.io/paletteer/)** - Comprehensive Collection of Color Palettes
* **[reasontheme](https://github.com/ReasonFoundation/reasontheme)** - A Reason Pension Integrity Project ggplot theme
* **[Rokemon](https://github.com/schochastics/Rokemon)** - Pokemon Style Plotting And Data
* **[see](https://easystats.github.io/see/)** - Visualisation Toolbox for 'easystats' and Extra Geoms, Themes and Color Palettes for 'ggplot2'
* **[thematic](https://rstudio.github.io/thematic/)** - Unified and Automatic Theming of 'ggplot2', 'lattice', and 'base' R Graphics
* **[trekcolors](https://github.com/leonawicz/trekcolors)** - Star Trek Color Palettes
* **[tvthemes](https://ryo-n7.github.io/tvthemes/)** - TV Show Themes and Color Palettes for 'ggplot2' Graphics
* **[urbnthemes](https://urbaninstitute.github.io/urbnthemes/)** - Additional theme and utilities for "ggplot2" in the Urban Institute style
* **[wesanderson](https://github.com/karthik/wesanderson)** - A Wes Anderson Palette Generator


### 3D


* **[gg3D](https://github.com/AckerDWM/gg3D)** - 3D perspective plots for ggplot2
* **[rayrender](http://www.rayrender.net)** - Build and Raytrace 3D Scenes
* **[rayshader](https://www.rayshader.com)** - Create and Visualize Hillshaded Maps from Elevation Matrices
* **[rgl](https://cran.r-project.org/web/packages/rgl/)** - 3D Visualization Using OpenGL
* **[mschart](https://ardata-fr.github.io/mschart/)** - Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint' Documents

## Spatial

* **[cartography](https://riatelab.github.io/cartography/docs/)** - Thematic Cartography
* **[countrycode](https://github.com/vincentarelbundock/countrycode/)** - Convert Country Names and Country Codes 
* **[ggsn](https://github.com/oswaldosantos/ggsn)** - North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap'
* **[leaflet](https://rstudio.github.io/leaflet/)** - Create Interactive Web Maps with the JavaScript 'Leaflet' Library
* **[lwgeom](https://r-spatial.github.io/lwgeom/)** - Bindings to Selected 'liblwgeom' Functions for Simple Features
* **[sf](https://r-spatial.github.io/sf/)** - Simple Features for R
 

## Reporting

* **[cssgrid](https://cssgrid.atusy.net)** - Easy CSS Grid Layout For R Markdown And Shiny
* **[details](https://yonicd.github.io/details)** - Create Details HTML Tag for Markdown and Package Documentation
* **[downloadthis](https://fmmattioni.github.io/downloadthis)** - Implement Download Buttons in 'rmarkdown'
* **[encryptedRmd](https://github.com/dirkschumacher/encryptedRmd)** - Encrypt Html Reports Using 'Libsodium'
* **[flair](https://kbodwin.github.io/flair/)** - Highlight, Annotate, and Format your R Source Code
* **[grillade](https://dreamrs.github.io/grillade/)** - Grid System for the Web
* **[icon](https://github.com/mitchelloharawild/icon)** - SVG icons for R documents
* **[rmarkdown](https://rmarkdown.rstudio.com)** - Dynamic Documents for R
  * [R markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/)
* **[tweetrmd](https://github.com/gadenbuie/tweetrmd)** - Embed Tweets in R Markdown
* **[workflowr](https://jdblischak.github.io/workflowr)** - A Framework for Reproducible and Collaborative Data Science


### Templates

* **[blogdown](https://bookdown.org/yihui/blogdown)** - Create Blogs and Websites with R Markdown
* **[bookdown](https://bookdown.org)** - Authoring Books and Technical Documents with R Markdown
* **[distill](https://rstudio.github.io/distill/)** - 'R Markdown' Format for Scientific and Technical Writing
* **[officer](https://davidgohel.github.io/officer/)** - Manipulation of Microsoft Word and PowerPoint Documents
* **[omni](https://rfortherestofus.github.io/omni)** - RMarkdown template, ggplot2 theme, and table function for OMNI Institute
* **[particlesjs](https://github.com/dreamRs/particlesjs)** - Beautiful Background for 'Shiny' Applications and 'RMarkdown' Documents
* **[rolldown](https://github.com/yihui/rolldown)** - R Markdown Output Formats for Storytelling
* **[thesisdown](https://github.com/ismayc/thesisdown)** - An updated R Markdown thesis template using the bookdown package
* **[tint](https://github.com/eddelbuettel/tint)** - 'tint' is not 'Tufte'
* **[tufte](https://rstudio.github.io/tufte/)** - Tufte's Styles for R Markdown Documents
* **[vitae](https://docs.ropensci.org/vitae/)** - Curriculum Vitae for R Markdown
* **[xaringan](https://github.com/yihui/xaringan)** - Presentation Ninja
* **[xaringanExtra](https://github.com/gadenbuie/xaringanExtra/)** - Extras And Extensions for Xaringan Slides
* **[xaringanthemer](https://pkg.garrickadenbuie.com/xaringanthemer/)** - Xaringan CSS Theme Generator

### Tables

* **[flextable](https://davidgohel.github.io/flextable/)** - Functions for Tabular Reporting
* **[gt](https://gt.rstudio.com/)** - Easily Create Presentation-Ready Display Tables
* **[kableExtra](http://haozhu233.github.io/kableExtra/)** - Construct Complex Table with 'kable' and Pipe Syntax
* **[rhandsontable](http://jrowen.github.io/rhandsontable/)** - Interface to the 'Handsontable.js' Library

## Data manipulation

* **[anytime](https://github.com/eddelbuettel/anytime)** - Anything to 'POSIXct' or 'Date' Converter
* **[batman](https://github.com/Ironholds/batman)** - Convert categorical representations of logicals to actual logicals
* **[janitor](http://sfirke.github.io/janitor/)** - Simple Tools for Examining and Cleaning Dirty Data
* **[poorman](https://github.com/nathaneastwood/poorman)** - A Poor Man's Base R Copy of 'dplyr' Verbs
* **[RVerbalExpressions](https://rverbalexpressions.netlify.app)** - Create Regular Expressions Easily
* **[santoku](https://hughjonesd.github.io/santoku/)** - A Versatile Cutting Tool for R
* **[slider](https://davisvaughan.github.io/slider/)** - Sliding Window Functions

## Statistics

* **[bigstatsr](https://privefl.github.io/bigstatsr/)** - Statistical Tools for Filebacked Big Matrices
* **[caret](http://topepo.github.io/caret/)** - Classification and Regression Training
* **[dbscan](https://github.com/mhahsler/dbscan)** - Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
* **[evabic](https://abichat.github.io/evabic/)** - Evaluation of Binary Classifiers
* **[factominer](http://factominer.free.fr)** - Multivariate Exploratory Data Analysis and Data Mining
* **[mclust](https://mclust-org.github.io/mclust/)** - Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
* **[mgcv](https://CRAN.R-project.org/package=mgcv)** - Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
* **[mnormt](https://CRAN.R-project.org/package=mnormt)** - mnormt: The Multivariate Normal and t Distributions
* **[pqdr](https://echasnovski.github.io/pdqr/)** - Work with Custom Distribution Functions
* **[quantreg](https://CRAN.R-project.org/package=quantreg)** - Quantile Regression
* **[ranger](https://github.com/imbs-hl/ranger)** - A Fast Implementation of Random Forests
* **[PLNmodels](http://julien.cremeriefamily.info/PLNmodels/)** - Poisson Lognormal Models

### Exploratory data analysis

* **[DataExplorer](https://boxuancui.github.io/DataExplorer/)** - Automate Data Exploration and Treatment
* **[naniar](http://naniar.njtierney.com)** - Data Structures, Summaries, and Visualisations for Missing Data
* **[summarytools](https://github.com/dcomtois/summarytools)** - Tools to Quickly and Neatly Summarize Data


### Tidymodel

* **[baguette](https://baguette.tidymodels.org)** - Efficient Model Functions for Bagging
* **[broom](https://broom.tidyverse.org)** - Convert Statistical Analysis Objects into Tidy Tibbles
* **[corrr](https://corrr.tidymodels.org)** - Correlations in R
* **[dials](https://dials.tidymodels.org)** - Tools for Creating Tuning Parameter Values
* **[discrim](https://discrim.tidymodels.org)** - Model Wrappers for Discriminant Analysis
* **[parsnip](https://tidymodels.github.io/parsnip/)** - A Common API to Modeling and Analysis Functions
* **[plsmod](https://plsmod.tidymodels.org)** - Model Wrappers for Projection Methods
* **[poissonreg](https://poissonreg.tidymodels.org)** - Model Wrappers for Poisson Regression
* **[recipes](https://tidymodels.github.io/recipes/)** - Preprocessing Tools to Create Design Matrices
* **[rsamples](https://tidymodels.github.io/rsample/)** - General Resampling Infrastructure
* **[textrecipes](https://textrecipes.tidymodels.org)** - Extra 'Recipes' for Text Processing
* **[themis](https://tidymodels.github.io/themis/)** - Extra Recipes Steps for Dealing with Unbalanced Data
* **[tune](https://tidymodels.github.io/tune/)** - Tidy Tuning Tools
* **[yardstick](https://tidymodels.github.io/yardstick/)** - Tidy Characterizations of Model Performance
* **[workflows](https://workflows.tidymodels.org)** - Modeling Workflows

### Networks and trees

* **[ggraph](https://github.com/thomasp85/ggraph)** - An Implementation of Grammar of Graphics for Graphs and Networks
* **[tidygraph](https://github.com/thomasp85/tidygraph)** - A Tidy API for Graph Manipulation
* [**tidytree**, **treeio** and **ggtree**](https://yulab-smu.github.io/treedata-book/) - Data Integration, Manipulation and Visualization of Phylogenetic Trees
  * [Annotate a phylogenetic tree with insets](https://guangchuangyu.github.io/software/ggtree/vignettes/ggtree-inset.html)
  
### Time series

* **[fable](https://fable.tidyverts.org)** - Forecasting Models for Tidy Time Series
* **[fasster](https://github.com/tidyverts/fasster)** - Fast Additive Switching of Seasonality, Trend and Exogenous Regressors
* **[feasts](https://feasts.tidyverts.org)** - Feature Extraction And Statistics for Time Series
* **[fpp3](https://github.com/robjhyndman/fpp3-package)** - Data for "Forecasting: Principles and Practice" (3rd Edition)
* **[prophet](https://facebook.github.io/prophet/)** - Automatic Forecasting Procedure
* **[tsibble](https://tsibble.tidyverts.org)** - Tidy Temporal Data Frames and Tools


## Programming

* **[attempt](https://github.com/ColinFay/attempt)** - Tools for Defensive Programming
* **[casewhen](https://github.com/RLesur/casewhen)** - Create Reusable 'dplyr' 'case_when()' Functions
* **[crayon](https://github.com/r-lib/crayon)** - Colored Terminal Output
* **[cyclocomp](https://github.com/MangoTheCat/cyclocomp)** - Cyclomatic Complexity of R Code
* **[furrr](https://davisvaughan.github.io/furrr/)** - Apply Mapping Functions in Parallel using Futures
* **[future](https://github.com/HenrikBengtsson/future)** - Unified Parallel and Distributed Processing in R for Everyone
* **[microbenchmark](https://github.com/joshuaulrich/microbenchmark)** - Accurate Timing Functions
* **[R6](https://r6.r-lib.org)** - Encapsulated Classes with Reference Semantics
* **[Rcpp](https://cran.r-project.org/web/packages/Rcpp/)** - Seamless R and C++ Integration
  * [Rcpp for everyone](https://teuder.github.io/rcpp4everyone_en/)
* **[renv](https://rstudio.github.io/renv/)** - Project Environments for R
* **[rlang](https://rlang.r-lib.org)** - Functions for Base Types and Core R and 'Tidyverse' Features
* **[strict](https://github.com/hadley/strict)** - Make R Just a Little Stricter

## Package developement

* **[attachment](https://thinkr-open.github.io/attachment/)** - Deal with Dependencies
* **[chameleon](https://thinkr-open.github.io/chameleon/)** - Build And Highlight Package Documentation With Customized Templates
* **[covr](https://covr.r-lib.org)** - Test Coverage for Packages
* **[deepdep](https://dominikrafacz.github.io/deepdep/)** - Visualise and Explore the Deep Dependencies of R Packages 
* **[devtools](https://devtools.r-lib.org)** - Tools to Make Developing R Packages Easier
* **[goodpractice](http://mangothecat.github.io/goodpractice/)** - Advice on R Package Building
* **[lifecycle](https://lifecycle.r-lib.org)** - Manage the Life Cycle of your Package Functions
* **[pkgdown](https://pkgdown.r-lib.org)** - Make Static HTML Documentation for a Package
* **[spelling](https://docs.ropensci.org/spelling)** - Tools for Spell Checking in R
* **[testthat](https://testthat.r-lib.org)** - Unit Testing for R
* **[usethis](https://usethis.r-lib.org)** - Automate Package and Project Setup
* **[vdiffr](https://github.com/r-lib/vdiffr)** - Visual Regression Testing and Graphical Diffing

## Interactivity


* **[beepr](https://github.com/rasmusab/beepr)** - Easily Play Notification Sounds on any Platform
* **[dadjoke](https://github.com/jhollist/dadjoke)** - Return a Random Dad Joke
* **[DT](https://rstudio.github.io/DT/)** - A Wrapper of the JavaScript Library 'DataTables'
* **[notifier](https://github.com/gaborcsardi/notifier)** - Cross Platform Desktop Notifications
* **[rAmCharts](http://datastorm-open.github.io/introduction_ramcharts/)** - JavaScript Charts Tool
* **[reactable](https://glin.github.io/reactable/)** - Interactive Data Tables Based on 'React Table'
* **[markdownInput](https://github.com/juliendiot42/markdownInput)** - https://github.com/juliendiot42/markdownInput
* **[supercaliheatmapwidget](https://github.com/hrbrmstr/supercaliheatmapwidget)** - Supercalifragilistic HTML Calendar Heatmaps
* **[tictoc](http://collectivemedia.github.io/tictoc/)** - Functions for timing R scripts, as well as implementations of Stack and List structures
* **[timelineschart](https://github.com/dreamRs/timelineschart)** - Timelines Chart Htmlwidget
* **[telegram.bot](https://ebeneditos.github.io/telegram.bot/)** - Develop a 'Telegram Bot' with R


### Shiny

* **[fresh](https://dreamrs.github.io/fresh/)** - Fresh 'Shiny' Themes
* **[golem](https://thinkr-open.github.io/golem/)** - A Framework for Robust Shiny Applications
* **[htmlwidgets](http://www.htmlwidgets.org)** - HTML Widgets for R
* **[shinipsum](https://thinkr-open.github.io/shinipsum/)** - Lorem-Ipsum-like Helpers for fast Shiny Prototyping
* **[shiny](https://shiny.rstudio.com)** - Web Application Framework for R
* **[shinybusy](https://github.com/dreamRs/shinybusy)** - Busy Indicator for 'Shiny' Applications
* **[shinydashboard](https://rstudio.github.io/shinydashboard/)** - Create Dashboards with 'Shiny'
* **[shinypop](https://github.com/dreamRs/shinypop)** - Collection of Notifications for 'Shiny' Applications
* **[shinysnippets](https://github.com/ThinkR-open/shinysnippets)** - RStudio Snippets for Shiny devs
* **[shinyWidgets](https://dreamrs.github.io/shinyWidgets/)** - Custom Inputs Widgets for Shiny
* **[sortable](https://rstudio.github.io/sortable)** - Drag-and-Drop in 'shiny' Apps with 'SortableJS'
* **[vov](https://vov-pkg.netlify.com)** - Shiny CSS Animations
* **[waiter](https://github.com/JohnCoene/waiter)** - Loading Screen for 'Shiny'


## Web

* **[httr](https://httr.r-lib.org)** - Tools for Working with URLs and HTTP
* **[qrencoder](https://github.com/hrbrmstr/qrencoder)** - Quick Response Code (QR Code) / Matrix Barcode Creator

### APIs

* **[gh](https://github.com/r-lib/gh)** - 'GitHub' 'API'
* **[rtweet](https://rtweet.info)** - Collecting Twitter Data
* **[slackr](https://github.com/hrbrmstr/slackr)** - Send Messages, Images, R Objects and Files to 'Slack' Channels/Users

### Mails

* **[emayili](https://datawookie.github.io/emayili/)** - Send email messages
* **[ponyexpress](https://docs.ropensci.org/ponyexpress/)** - Automate sending email with 'Gmail'

## Maths

* **[deSolve](http://desolve.r-forge.r-project.org)** - Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
* **[freealg](https://github.com/RobinHankin/freealg)** - The Free Algebra
* **[mvp](https://github.com/RobinHankin/mvp)** - Fast Symbolic Multivariate Polynomials


## For biology

* **[bigsnpr](https://privefl.github.io/bigsnpr/)** - Analysis of Massive SNP Arrays
* **[phyloseq](https://joey711.github.io/phyloseq/)** - Handling and analysis of high-throughput microbiome census data
* **[tidygenomics](https://const-ae.github.io/tidygenomics/)** - Tidy Verbs for Dealing with Genomic Data Frames
* **[vegan](https://github.com/vegandevs/vegan)** - Community Ecology Package
* **[yatah](https://abichat.github.io/yatah/)** - Yet Another TAxonomy Handler


## Datasets

* **[airparis](https://ardata-fr.github.io/airparis/)** - Open Data for Air Quality in Ile-de-France
* **[animalcrossing](https://github.com/chendaniely/animalcrossing)** - Animal Crossing data
* **[coronavirus](https://ramikrispin.github.io/coronavirus/)** - The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset
* **[datasaurus](https://itsalocke.com/datasaurus/)** - Datasets from the Datasaurus Dozen
* **[gapminder](https://github.com/jennybc/gapminder)** - Data from Gapminder
* **[inca3](https://thinkr-open.github.io/inca3/)** - Donnees De L'Etude INCA 3
* **[nycflights13](https://github.com/hadley/nycflights13)** - Flights that Departed NYC in 2013
* **[networkdata](https://github.com/schochastics/networkdata)** - Repository of Network Datasets 
* **[prenoms](https://github.com/ThinkR-open/prenoms)** - French Baby Names 1900-2017
* **[tdf](https://github.com/alastairrushworth/tdf)** - Tour de France data
* **[tidytuesdayR](https://thebioengineer.github.io/tidytuesdayR/)** - Access the Weekly TidyTuesday Project Dataset
* **[tsibbledata](https://tsibbledata.tidyverts.org)** - Diverse Datasets for 'tsibble'