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260 Open 932 Closed
260 Open 932 Closed
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Issues list

influenza
#1178 opened Aug 31, 2023 by MuYi-Yang-cell
12
Genome coverage inflection point for assembly quality (contig number and BUSCO)
#1173 opened Aug 30, 2023 by 000generic
1 task done
4
Premature ending without any error message
#1170 opened Aug 25, 2023 by jolespin
1 task done
3
Contig file generated by spades.py contains 'N' characters
#1169 opened Aug 24, 2023 by paldougall
1 task done
3
Question high intra-population diversity metagenome assembly
#1168 opened Aug 24, 2023 by jianshu93
1 task done
Out of Memory Issue
#1167 opened Aug 21, 2023 by magcurly
1 task done
3
spades-core running only with one processor
#1155 opened Jul 11, 2023 by CristianMolinaQuiroz
1 task done
5
SPAdes 3.15.5 ERROR in MacOS Monterey: == Error == exception caught: <class 'FileNotFoundError'>
#1153 opened Jun 27, 2023 by YuLanSky
1 task done
2
Error == system call for: "['/usr/libexec/spades/spades-core', '/home/yushi/project/sample_519/output_dir/spades_assembly/K27/configs/config.info', '/home/yushi/project/sample_519/output_dir/spades_assembly/K27/configs/isolate_mode.info']" finished abnormally, OS return value: -9 None wsl Issues with unsupported WSL/WSL2
#1149 opened Jun 20, 2023 by Phoebeisphoebe
1 task done
1
[cloudspades-3.12.0-0]spades-core with K77 finished abnormally, err code: -8
#1143 opened May 24, 2023 by ddzhang3
1 task
@Itolstoganov
1
Error: [] finished abnormally, OS return value: -9
#1140 opened May 17, 2023 by lukaskon
1 task done
1
binspreader issue - error when specifying --path scaffolds.paths
#1138 opened May 17, 2023 by ebi-jlu8
1 task done
1
metaspades warning invalid not a bug Not a bug
#1137 opened May 16, 2023 by Lijiake007
1 task done
1
How do I assemble a merged paired-data using spades?
#1134 opened May 10, 2023 by roseedwin
1 task done
6
Having too many short contigs
#1133 opened May 5, 2023 by chtsai0105
1 task done
1
Store intermediate de Bruijn data in tmp folder rather than in RAM
#1130 opened Apr 22, 2023 by yqy6611
1
err code -9
#1122 opened Apr 4, 2023 by cpouchon
1 task
1
== Error == system call for: "['/home/zhuchenzhao/software/SPAdes-3.15.5-Linux/bin/spades-core',
#1119 opened Mar 30, 2023 by chenzhaozhu
1 task
7
spades-ionhammer terminates abnormally, OS return value: -6
#1117 opened Mar 28, 2023 by ejfresch
1 task done
Issue assembling contigs; spades-hammer error
#1113 opened Mar 23, 2023 by Deco313
1 task done
11
k-mer counting take too long
#1111 opened Mar 22, 2023 by muzi9841
1 task done
1
system call for: "['./spades-hammer'] error
#1102 opened Mar 10, 2023 by MaxBai0123
1 task done
1
Contigs contain non-ascii characters
#1101 opened Mar 8, 2023 by christianbrinch
1 task done
4
Ubuntu 22.04.2 LTS finished abnormally, OS return value: -11
#1094 opened Feb 27, 2023 by skbrimer
1 task done
2
system call for: "[]" finished abnormally, OS return value: -9
#1093 opened Feb 25, 2023 by AMosca96
1 task done
2
ProTip! Adding no:label will show everything without a label.