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Commits on Jul 20, 2023

• Merge pull request Reed-CompBio#101 from ntalluri/ensemble

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• Update docstring description and mean call

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• Bump Snakemake version

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• Call ensemble network a pathway

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Commits on Jul 19, 2023

• Merge branch 'ensemble'

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• Revert initial ensemble implementation

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Commits on Jul 18, 2023

• updated to pandas 1.4.4 in my conda env, and was able to use regex=False and NODE_SEP

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• made changes

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Commits on Jul 13, 2023

• fixed test in case of rounding issue

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• added updates based on meeting

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• cleaned up precommit

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• added a comment

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• testing again

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Commits on Jul 12, 2023

• comment about opening files in excel

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• ensemble network version 1

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Commits on Jul 6, 2023

• Merge pull request Reed-CompBio#80 from ntalluri/version2

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• Fix test failures

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• Fix algorithm name extraction from path

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Commits on Jul 5, 2023

• final checks

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• fixed pca files and tests

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• update to pca files and test

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Commits on Jul 3, 2023

• PyCharm formatting suggestions

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• Fix EGFR config file for ML

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• Increase figure resolution

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• Rename PCA components file to variance

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Commits on Jul 1, 2023

• fixed metrics and linkages

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Commits on Jun 23, 2023

• reviewed code

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• allowed for matching coloring across plots

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Commits on Jun 22, 2023

• used pre-commit

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• Merge branch 'version2' of github.com:ntalluri/spras into version2

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• fixed util.py and cleaned up code

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Commits on Jun 21, 2023

• Merge branch 'master' into version2

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• made slight changes to ml.py but will continue to change more, updated the config, and updated the test_ml.py{

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• Merge pull request Reed-CompBio#83 from Reed-CompBio/pre-commit

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Commits on May 21, 2023

• Revert "Introduce errors into dataset.py to demonstrate new testing"

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