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Commits on Feb 22, 2023

• Merge branch 'master' of https://github.com/jenniferlu717/KrakenTools

  

  Jennifer Lu

  committed
  49b93f1

• Fixing issue with l_vals in function

  

  Jennifer Lu

  committed
  45015ca

Commits on Nov 10, 2022

• Update README.md

  Show description for 5005f4c
  nataliarinconv

  authored
  5005f4c

Commits on Oct 3, 2022

• Modification of README for readability

  

  Jennifer Lu

  committed
  dc95f14

• Updating README with publication information

  

  Jennifer Lu

  committed
  745e06c

Commits on Sep 30, 2022

• Fixing compatibility with KrakenUniq output files

  

  Jennifer Lu

  committed
  91325ce

Commits on Jun 18, 2021

• Fixing issue with krona output

  

  Jennifer Lu

  committed
  1271ae2

Commits on May 21, 2021

• fishers updated

  

  Natalia Rincon

  committed
  011f3ad

Commits on Apr 28, 2021

• added simpson's and inverse simpson's alpha diversity index

  

  Natalia Rincon

  committed
  94ddc89

Commits on Apr 19, 2021

• Update README.md to indicate compatiblity with KrakenUniq reports

  

  Jennifer Lu

  committed
  3788eca

• Updating combine_kreports.py to be compatible with kraken2uniq/krakenuniq reports

  

  Jennifer Lu

  committed
  50b081e

• Merge branch 'master' of https://github.com/jenniferlu717/KrakenTools

  

  Jennifer Lu

  committed
  c640d7b

• Making extract_kraken_reads.py compatible for krakenuniq/kraken2uniq reports

  

  Jennifer Lu

  committed
  23671f6

Commits on Mar 20, 2021

• Merge pull request jenniferlu717#33 from martin-steinegger/master

  Show description for 880254f
  jenniferlu717

  authored
  880254f

• Fix shebang line

  martin-steinegger

  committed
  ff29ebc

Commits on Mar 17, 2021

• Fixing make_kreport.py if no unclassified reads

  

  Jennifer Lu

  committed
  fb1fcc4

Commits on Mar 5, 2021

• Fixing kreport2krona.py level designations

  

  Jennifer Lu

  committed
  b6aeedf

Commits on Feb 23, 2021

• Fixing kreport2krona to be compatible with krakenuniq reports

  

  Jennifer Lu

  committed
  0d94f83

Commits on Feb 13, 2021

• [FEATURE] Added beta_diversity script (Bray-Curtis)

  cpockrandt

  committed
  2ac89c7

Commits on Feb 9, 2021

• Beta diversity script added (bray curtis)

  cpockrandt

  committed
  a8d1b42

Commits on Jan 29, 2021

• Merge pull request jenniferlu717#31 from pgcudahy/new-exit

  Show description for e412fdf
  jenniferlu717

  authored
  e412fdf

Commits on Jan 27, 2021

• Change exit() to sys.exit() and add a check for empty fastq files

  pgcudahy

  committed
  75042e7

Commits on Oct 28, 2020

• Update README.md

  nataliarinconv

  authored
  0e7a297

• README edit

  

  Natalia Rincon

  committed
  50fcdf2

• DiversityTools: alpha_diversity.py added

  

  Natalia Rincon

  committed
  e53911c

Commits on Aug 20, 2020

• Fixing printed messages about number of reads printed to file

  

  Jennifer Lu

  committed
  be4cff0

• Allowing script to check for 'READID', 'READID/1', 'READID/2'.

  

  Jennifer Lu

  committed
  697df3f

Commits on Jul 14, 2020

• Adding combine_mpa.py. Allowing mpa output with percentages for kreport2mpa.py.

  Show description for d8cc342
  

  Jennifer Lu

  committed
  d8cc342

Commits on Jul 13, 2020

• Adding kreport2mpa.py (from github.com/jennifer.lu/Bracken) and updating Copyright

  

  Jennifer Lu

  committed
  e4eb51f

Commits on May 18, 2020

• Fixing reading kraken1 reports (where root requires R level assignment)

  

  Jennifer Lu

  committed
  53957a4

Commits on May 10, 2020

• Formatting README.md

  

  Jennifer Lu

  committed
  0862e28

Commits on Apr 21, 2020

• Merge pull request jenniferlu717#13 from pvanheus/hashbang_fix

  Show description for 6950d17
  jenniferlu717

  authored
  6950d17

Commits on Apr 20, 2020

• Fix hashbang lines for scripts

  pvanheus

  committed
  aa2e453

• Adding --use-read-len option to Kraken report

  

  Jennifer Lu

  committed
  75a7753

Commits on Apr 19, 2020

• Fixing formatting for percentage column

  

  Jennifer Lu

  committed
  6258632

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