forked from nf-core/smrnaseq
-
Notifications
You must be signed in to change notification settings - Fork 0
/
modules.json
111 lines (111 loc) · 5.01 KB
/
modules.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
{
"name": "nf-core/smrnaseq",
"homePage": "https://github.com/nf-core/smrnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"cat/cat": {
"branch": "master",
"git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "0997b47c93c06b49aa7b3fefda87e728312cf2ca",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "95cf5fe0194c7bf5cb0e3027a2eb7e7c89385080",
"installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"umicollapse": {
"branch": "master",
"git_sha": "b97197968ac12dde2463fa54541f6350c46f2035",
"installed_by": ["modules"]
},
"umitools/extract": {
"branch": "master",
"git_sha": "d2c5e76f291379f3dd403e48e46ed7e6ba5da744",
"installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
},
"untarfiles": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"fastq_fastqc_umitools_fastp": {
"branch": "master",
"git_sha": "cabcc0dadf8366aa7a9930066a7b3dd90d9825d5",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}