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Commits on Jan 10, 2018

• Fix typo, s/bazel_version/bazel_ver/

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• Add PULL_REQUEST_TEMPLATE that says we aren't taking pull requests

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Commits on Jan 5, 2018

• Update docker README to include a link to the docker instructions.

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• Ensure that a specific bazel version is installed.

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Commits on Jan 4, 2018

• Update all hap.py command lines to use --preprocess-truth

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• Add explicit note that DeepVariant requires Python 2.7.

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• Remove cloud setup links from deepvariant docker instructions as cloud is not

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• Mention the CPU requirements for our pre-compiled binaries in the README.

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Commits on Dec 15, 2017

• access -> assess

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Commits on Dec 14, 2017

• Update the documentation to make it clear that Google Cloud is not required by DeepVariant at runtime.

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• In the quick-start, remove "bash" from a block that contains literal text.

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Commits on Dec 13, 2017

• Improvements to md_extract_cmd and case studies.

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• This is a minimal tool for extracting command text from markdown files.

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• Update DeepVariant docker version to 0.4.1.

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• BioStars doesn't support tag-based notifications so remove the recommendation that users post to BioStars. Instead recommend people post to GitHub issues for everything DeepVariant related.

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• Update the DeepVariant 0.4.1 release notes with the fix for the htslib_gcp_oauth problem.

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• Update DeepVariant documentation to reflect the new binaries version (0.4.1).

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Commits on Dec 12, 2017

• Fix for htslib_gcp_oauth when network access is unavailable (was crashing)

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Commits on Dec 10, 2017

• Adding new 'Evaluating DeepVariant' section to README

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Commits on Dec 9, 2017

• Add link to pre-built DeepVariant binaries.

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• Add -P to gsutil cp commands on the BIN_DIR so that executable files have their executable bit set after fetching.

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• Add an Availability section to README.md noting that DeepVariant runs on any linux like computer and is not tied to cloud for execution.

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• Updating benchmarking numbers to include FN/FP numbers.

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• Clarify that we need gsutil to be available before running the prereq scripts.

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• Fix formatting in doc file.

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• Add reference version to our documented results statement.

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Commits on Dec 4, 2017

• Project import generated by Copybara.

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Commits on Dec 3, 2017

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Commits on Dec 2, 2017

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Commits on Dec 1, 2017

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• Project import generated by Copybara.

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• Initial release of DeepVariant

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