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annafagre
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Automatically exported from code.google.com/p/figtree
A script to re-color a FigTree saved Nexus file
Automatically exported from code.google.com/p/prottest3
A pipeline combining modeltest (jmodeltest, prottest), phylogenetic reconstruction (phyml, raxml), topology comparison (CONSEL)
Automatically exported from code.google.com/p/prottest3
Automatically exported from code.google.com/p/jmodeltest2
Model selection using nested sampling tutorial for BEAST 2
A library for working with phylogenetic and population genetic data.
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Massively parallel phylogenetic placement of genetic sequences
Streamlining phylogenomic data gathering, processing and visualization
CDCgov / MicrobeTrace
Forked from AABoyles/MicrobeTraceThe Visualization Multitool for Molecular Epidemiology and Bioinformatics
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Efficient phylogenomic software by maximum likelihood
Bayesian Evolutionary Analysis Sampling Trees
RAxML Next Generation: faster, easier-to-use and more flexible
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …
Official git repository for Biopython (originally converted from CVS)
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Electronic Lab Notebook based on the Obsidian markdown editor.
