VAPiD: Viral Annotation and Identification Pipeline

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

A pipeline for viral identification from metagenomic samples

Reconstruction and analysis of viral and host genomes at multi-organ level

Pipeline for metagenomic community analysis using DNA isolated from virus-like particles

A pipeline combining modeltest (jmodeltest, prottest), phylogenetic reconstruction (phyml, raxml), topology comparison (CONSEL)