diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index b77f4548..dbd8437a 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -25,7 +25,7 @@ jobs:
       - name: Enable workflow based on preconditions
         run: echo "Workflow enabled."
 
-  lint:
+  lint-format:
     needs: [enable-workflow]
     runs-on: ubuntu-latest
     steps:
@@ -33,12 +33,15 @@ jobs:
     - uses: actions/setup-python@v5
       with:
         python-version: '3.12'
-    - name: Install Black
+    - name: Install Ruff
       run: |
-        pip install black
-    - name: Lint with Black
+        pip install ruff
+    - name: Lint with Ruff
       run: |
-        black --check --diff .
+        ruff check
+    - name: Format with Ruff
+      run: |
+        ruff format --check
 
   build-docs:
     needs: [enable-workflow]
@@ -57,7 +60,7 @@ jobs:
         sphinx-build -W --keep-going -T -E -D language=en docs docs/_build
 
   test:
-    needs: [lint, build-docs]
+    needs: [lint-format, build-docs]
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
@@ -117,7 +120,7 @@ jobs:
       uses: codecov/codecov-action@v3
 
   test-extras:
-    needs: [lint, build-docs]
+    needs: [lint-format, build-docs]
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
index 49bde193..e08f87b8 100644
--- a/CONTRIBUTING.rst
+++ b/CONTRIBUTING.rst
@@ -65,9 +65,10 @@ To set up ``snps`` for local development:
    .. note:: After running the tests, a coverage report can be viewed by opening
              ``htmlcov/index.html`` in a browser.
 
-6. Check code formatting::
+6. Perform code linting and formatting::
 
-    $ pipenv run black --check --diff .
+    $ pipenv run ruff check --fix
+    $ pipenv run ruff format
 
 7. Commit your changes and push your branch to GitHub::
 
diff --git a/Pipfile b/Pipfile
index fc1c600c..fedb0a6a 100644
--- a/Pipfile
+++ b/Pipfile
@@ -9,7 +9,7 @@ pytest-cov = "*"
 pytest-watch = "*"
 sphinx = "*"
 sphinx-rtd-theme = "*"
-black = "*"
+ruff = "*"
 matplotlib = "*"
 
 [packages]
diff --git a/Pipfile.lock b/Pipfile.lock
index 58166468..52f6e940 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "af84e5b438abfe038ec1ae769f85510256b2b12ab5b73671afb9f9a3447e887d"
+            "sha256": "262b41491e31c0d143e9ef199d91a51f025120eb375313d085dd3a3a7ff1c860"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -24,102 +24,102 @@
         },
         "numpy": {
             "hashes": [
-                "sha256:02f98011ba4ab17f46f80f7f8f1c291ee7d855fcef0a5a98db80767a468c85cd",
-                "sha256:0b7e807d6888da0db6e7e75838444d62495e2b588b99e90dd80c3459594e857b",
-                "sha256:12c70ac274b32bc00c7f61b515126c9205323703abb99cd41836e8125ea0043e",
-                "sha256:1666f634cb3c80ccbd77ec97bc17337718f56d6658acf5d3b906ca03e90ce87f",
-                "sha256:18c3319a7d39b2c6a9e3bb75aab2304ab79a811ac0168a671a62e6346c29b03f",
-                "sha256:211ddd1e94817ed2d175b60b6374120244a4dd2287f4ece45d49228b4d529178",
-                "sha256:21a9484e75ad018974a2fdaa216524d64ed4212e418e0a551a2d83403b0531d3",
-                "sha256:39763aee6dfdd4878032361b30b2b12593fb445ddb66bbac802e2113eb8a6ac4",
-                "sha256:3c67423b3703f8fbd90f5adaa37f85b5794d3366948efe9a5190a5f3a83fc34e",
-                "sha256:46f47ee566d98849323f01b349d58f2557f02167ee301e5e28809a8c0e27a2d0",
-                "sha256:51c7f1b344f302067b02e0f5b5d2daa9ed4a721cf49f070280ac202738ea7f00",
-                "sha256:5f24750ef94d56ce6e33e4019a8a4d68cfdb1ef661a52cdaee628a56d2437419",
-                "sha256:697df43e2b6310ecc9d95f05d5ef20eacc09c7c4ecc9da3f235d39e71b7da1e4",
-                "sha256:6d45b3ec2faed4baca41c76617fcdcfa4f684ff7a151ce6fc78ad3b6e85af0a6",
-                "sha256:77810ef29e0fb1d289d225cabb9ee6cf4d11978a00bb99f7f8ec2132a84e0166",
-                "sha256:7ca4f24341df071877849eb2034948459ce3a07915c2734f1abb4018d9c49d7b",
-                "sha256:7f784e13e598e9594750b2ef6729bcd5a47f6cfe4a12cca13def35e06d8163e3",
-                "sha256:806dd64230dbbfaca8a27faa64e2f414bf1c6622ab78cc4264f7f5f028fee3bf",
-                "sha256:867e3644e208c8922a3be26fc6bbf112a035f50f0a86497f98f228c50c607bb2",
-                "sha256:8c66d6fec467e8c0f975818c1796d25c53521124b7cfb760114be0abad53a0a2",
-                "sha256:8ed07a90f5450d99dad60d3799f9c03c6566709bd53b497eb9ccad9a55867f36",
-                "sha256:9bc6d1a7f8cedd519c4b7b1156d98e051b726bf160715b769106661d567b3f03",
-                "sha256:9e1591f6ae98bcfac2a4bbf9221c0b92ab49762228f38287f6eeb5f3f55905ce",
-                "sha256:9e87562b91f68dd8b1c39149d0323b42e0082db7ddb8e934ab4c292094d575d6",
-                "sha256:a7081fd19a6d573e1a05e600c82a1c421011db7935ed0d5c483e9dd96b99cf13",
-                "sha256:a8474703bffc65ca15853d5fd4d06b18138ae90c17c8d12169968e998e448bb5",
-                "sha256:af36e0aa45e25c9f57bf684b1175e59ea05d9a7d3e8e87b7ae1a1da246f2767e",
-                "sha256:b1240f767f69d7c4c8a29adde2310b871153df9b26b5cb2b54a561ac85146485",
-                "sha256:b4d362e17bcb0011738c2d83e0a65ea8ce627057b2fdda37678f4374a382a137",
-                "sha256:b831295e5472954104ecb46cd98c08b98b49c69fdb7040483aff799a755a7374",
-                "sha256:b8c275f0ae90069496068c714387b4a0eba5d531aace269559ff2b43655edd58",
-                "sha256:bdd2b45bf079d9ad90377048e2747a0c82351989a2165821f0c96831b4a2a54b",
-                "sha256:cc0743f0302b94f397a4a65a660d4cd24267439eb16493fb3caad2e4389bccbb",
-                "sha256:da4b0c6c699a0ad73c810736303f7fbae483bcb012e38d7eb06a5e3b432c981b",
-                "sha256:f25e2811a9c932e43943a2615e65fc487a0b6b49218899e62e426e7f0a57eeda",
-                "sha256:f73497e8c38295aaa4741bdfa4fda1a5aedda5473074369eca10626835445511"
+                "sha256:03a8c78d01d9781b28a6989f6fa1bb2c4f2d51201cf99d3dd875df6fbd96b23b",
+                "sha256:08beddf13648eb95f8d867350f6a018a4be2e5ad54c8d8caed89ebca558b2818",
+                "sha256:1af303d6b2210eb850fcf03064d364652b7120803a0b872f5211f5234b399f20",
+                "sha256:1dda2e7b4ec9dd512f84935c5f126c8bd8b9f2fc001e9f54af255e8c5f16b0e0",
+                "sha256:2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010",
+                "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a",
+                "sha256:3373d5d70a5fe74a2c1bb6d2cfd9609ecf686d47a2d7b1d37a8f3b6bf6003aea",
+                "sha256:47711010ad8555514b434df65f7d7b076bb8261df1ca9bb78f53d3b2db02e95c",
+                "sha256:4c66707fabe114439db9068ee468c26bbdf909cac0fb58686a42a24de1760c71",
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+                "sha256:62b8e4b1e28009ef2846b4c7852046736bab361f7aeadeb6a5b89ebec3c7055a",
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+                "sha256:675d61ffbfa78604709862923189bad94014bef562cc35cf61d3a07bba02a7ed",
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+                "sha256:7349ab0fa0c429c82442a27a9673fc802ffdb7c7775fad780226cb234965e53c",
+                "sha256:7ab55401287bfec946ced39700c053796e7cc0e3acbef09993a9ad2adba6ca6e",
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+                "sha256:96ff0b2ad353d8f990b63294c8986f1ec3cb19d749234014f4e7eb0112ceba5a",
+                "sha256:9fad7dcb1aac3c7f0584a5a8133e3a43eeb2fe127f47e3632d43d677c66c102b",
+                "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0",
+                "sha256:a354325ee03388678242a4d7ebcd08b5c727033fcff3b2f536aea978e15ee9e6",
+                "sha256:a4abb4f9001ad2858e7ac189089c42178fcce737e4169dc61321660f1a96c7d2",
+                "sha256:ab47dbe5cc8210f55aa58e4805fe224dac469cde56b9f731a4c098b91917159a",
+                "sha256:afedb719a9dcfc7eaf2287b839d8198e06dcd4cb5d276a3df279231138e83d30",
+                "sha256:b3ce300f3644fb06443ee2222c2201dd3a89ea6040541412b8fa189341847218",
+                "sha256:b97fe8060236edf3662adfc2c633f56a08ae30560c56310562cb4f95500022d5",
+                "sha256:bfe25acf8b437eb2a8b2d49d443800a5f18508cd811fea3181723922a8a82b07",
+                "sha256:cd25bcecc4974d09257ffcd1f098ee778f7834c3ad767fe5db785be9a4aa9cb2",
+                "sha256:d209d8969599b27ad20994c8e41936ee0964e6da07478d6c35016bc386b66ad4",
+                "sha256:d5241e0a80d808d70546c697135da2c613f30e28251ff8307eb72ba696945764",
+                "sha256:edd8b5fe47dab091176d21bb6de568acdd906d1887a4584a15a9a96a1dca06ef",
+                "sha256:f870204a840a60da0b12273ef34f7051e98c3b5961b61b0c2c1be6dfd64fbcd3",
+                "sha256:ffa75af20b44f8dba823498024771d5ac50620e6915abac414251bd971b4529f"
             ],
             "markers": "python_version >= '3.9'",
-            "version": "==1.26.3"
+            "version": "==1.26.4"
         },
         "pandas": {
             "hashes": [
-                "sha256:159205c99d7a5ce89ecfc37cb08ed179de7783737cea403b295b5eda8e9c56d1",
-                "sha256:20404d2adefe92aed3b38da41d0847a143a09be982a31b85bc7dd565bdba0f4e",
-                "sha256:2707514a7bec41a4ab81f2ccce8b382961a29fbe9492eab1305bb075b2b1ff4f",
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-                "sha256:3de918a754bbf2da2381e8a3dcc45eede8cd7775b047b923f9006d5f876802ae",
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-                "sha256:85793cbdc2d5bc32620dc8ffa715423f0c680dacacf55056ba13454a5be5de88",
-                "sha256:8ce2fbc8d9bf303ce54a476116165220a1fedf15985b09656b4b4275300e920b",
-                "sha256:9f66419d4a41132eb7e9a73dcec9486cf5019f52d90dd35547af11bc58f8637d",
-                "sha256:a146b9dcacc3123aa2b399df1a284de5f46287a4ab4fbfc237eac98a92ebcb71",
-                "sha256:a1b438fa26b208005c997e78672f1aa8138f67002e833312e6230f3e57fa87d5",
-                "sha256:a20628faaf444da122b2a64b1e5360cde100ee6283ae8effa0d8745153809a2e",
-                "sha256:a41d06f308a024981dcaa6c41f2f2be46a6b186b902c94c2674e8cb5c42985bc",
-                "sha256:a626795722d893ed6aacb64d2401d017ddc8a2341b49e0384ab9bf7112bdec30",
-                "sha256:bde2bc699dbd80d7bc7f9cab1e23a95c4375de615860ca089f34e7c64f4a8de7",
-                "sha256:cfd6c2491dc821b10c716ad6776e7ab311f7df5d16038d0b7458bc0b67dc10f3",
-                "sha256:e60f1f7dba3c2d5ca159e18c46a34e7ca7247a73b5dd1a22b6d59707ed6b899a",
-                "sha256:eb1e1f3861ea9132b32f2133788f3b14911b68102d562715d71bd0013bc45440",
-                "sha256:eb61dc8567b798b969bcc1fc964788f5a68214d333cade8319c7ab33e2b5d88a",
-                "sha256:f5be5d03ea2073627e7111f61b9f1f0d9625dc3c4d8dda72cc827b0c58a1d042",
-                "sha256:f9670b3ac00a387620489dfc1bca66db47a787f4e55911f1293063a78b108df1",
-                "sha256:fbc1b53c0e1fdf16388c33c3cca160f798d38aea2978004dd3f4d3dec56454c9"
+                "sha256:001910ad31abc7bf06f49dcc903755d2f7f3a9186c0c040b827e522e9cef0863",
+                "sha256:0ca6377b8fca51815f382bd0b697a0814c8bda55115678cbc94c30aacbb6eff2",
+                "sha256:0cace394b6ea70c01ca1595f839cf193df35d1575986e484ad35c4aeae7266c1",
+                "sha256:1cb51fe389360f3b5a4d57dbd2848a5f033350336ca3b340d1c53a1fad33bcad",
+                "sha256:2925720037f06e89af896c70bca73459d7e6a4be96f9de79e2d440bd499fe0db",
+                "sha256:3e374f59e440d4ab45ca2fffde54b81ac3834cf5ae2cdfa69c90bc03bde04d76",
+                "sha256:40ae1dffb3967a52203105a077415a86044a2bea011b5f321c6aa64b379a3f51",
+                "sha256:43498c0bdb43d55cb162cdc8c06fac328ccb5d2eabe3cadeb3529ae6f0517c32",
+                "sha256:4abfe0be0d7221be4f12552995e58723c7422c80a659da13ca382697de830c08",
+                "sha256:58b84b91b0b9f4bafac2a0ac55002280c094dfc6402402332c0913a59654ab2b",
+                "sha256:640cef9aa381b60e296db324337a554aeeb883ead99dc8f6c18e81a93942f5f4",
+                "sha256:66b479b0bd07204e37583c191535505410daa8df638fd8e75ae1b383851fe921",
+                "sha256:696039430f7a562b74fa45f540aca068ea85fa34c244d0deee539cb6d70aa288",
+                "sha256:6d2123dc9ad6a814bcdea0f099885276b31b24f7edf40f6cdbc0912672e22eee",
+                "sha256:8635c16bf3d99040fdf3ca3db669a7250ddf49c55dc4aa8fe0ae0fa8d6dcc1f0",
+                "sha256:873d13d177501a28b2756375d59816c365e42ed8417b41665f346289adc68d24",
+                "sha256:8e5a0b00e1e56a842f922e7fae8ae4077aee4af0acb5ae3622bd4b4c30aedf99",
+                "sha256:8e90497254aacacbc4ea6ae5e7a8cd75629d6ad2b30025a4a8b09aa4faf55151",
+                "sha256:9057e6aa78a584bc93a13f0a9bf7e753a5e9770a30b4d758b8d5f2a62a9433cd",
+                "sha256:90c6fca2acf139569e74e8781709dccb6fe25940488755716d1d354d6bc58bce",
+                "sha256:92fd6b027924a7e178ac202cfbe25e53368db90d56872d20ffae94b96c7acc57",
+                "sha256:9dfde2a0ddef507a631dc9dc4af6a9489d5e2e740e226ad426a05cabfbd7c8ef",
+                "sha256:9e79019aba43cb4fda9e4d983f8e88ca0373adbb697ae9c6c43093218de28b54",
+                "sha256:a77e9d1c386196879aa5eb712e77461aaee433e54c68cf253053a73b7e49c33a",
+                "sha256:c7adfc142dac335d8c1e0dcbd37eb8617eac386596eb9e1a1b77791cf2498238",
+                "sha256:d187d355ecec3629624fccb01d104da7d7f391db0311145817525281e2804d23",
+                "sha256:ddf818e4e6c7c6f4f7c8a12709696d193976b591cc7dc50588d3d1a6b5dc8772",
+                "sha256:e9b79011ff7a0f4b1d6da6a61aa1aa604fb312d6647de5bad20013682d1429ce",
+                "sha256:eee3a87076c0756de40b05c5e9a6069c035ba43e8dd71c379e68cab2c20f16ad"
             ],
             "markers": "python_version >= '3.9'",
-            "version": "==2.2.0"
+            "version": "==2.2.2"
         },
         "python-dateutil": {
             "hashes": [
-                "sha256:0123cacc1627ae19ddf3c27a5de5bd67ee4586fbdd6440d9748f8abb483d3e86",
-                "sha256:961d03dc3453ebbc59dbdea9e4e11c5651520a876d0f4db161e8674aae935da9"
+                "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3",
+                "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
-            "version": "==2.8.2"
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
+            "version": "==2.9.0.post0"
         },
         "pytz": {
             "hashes": [
-                "sha256:7b4fddbeb94a1eba4b557da24f19fdf9db575192544270a9101d8509f9f43d7b",
-                "sha256:ce42d816b81b68506614c11e8937d3aa9e41007ceb50bfdcb0749b921bf646c7"
+                "sha256:2a29735ea9c18baf14b448846bde5a48030ed267578472d8955cd0e7443a9812",
+                "sha256:328171f4e3623139da4983451950b28e95ac706e13f3f2630a879749e7a8b319"
             ],
-            "version": "==2023.3.post1"
+            "version": "==2024.1"
         },
         "six": {
             "hashes": [
                 "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
                 "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==1.16.0"
         },
         "snps": {
@@ -128,11 +128,11 @@
         },
         "tzdata": {
             "hashes": [
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-            "version": "==2023.4"
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@@ -146,48 +146,19 @@
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@@ -508,11 +471,11 @@
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@@ -626,294 +589,271 @@
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@@ -924,11 +864,11 @@
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@@ -938,12 +878,36 @@
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+                "sha256:45cc09cc4c3b43fb10b59ef4d07318d9a3ecdbff03abd2e36e77b6dd9f9a5c85",
+                "sha256:4986db5e8880b0e6b7cd52ba36255d4793bf5cdc95bd6264806c233173b1ec0b",
+                "sha256:5369136a6474678e02426bd984466343924d1df8e2fd94a9b443cb7e3aa20d19",
+                "sha256:557ba04c816d23ce98a06e70af6abaa0485f6d94994ec78a42b05d1c03dcbd50",
+                "sha256:6a4db54edea37d1058b08947c789a2354ee02972ed5d1e0dca9b0b820f4c7f92",
+                "sha256:6a80d5cae8c265842c7419c560b9961561556c4361b297b4c431903f8c33b269",
+                "sha256:6a9c71a0b02985b4b0b6d14b875a6c86ddea2fdbebd0c9a720a806a8bbffc69f",
+                "sha256:6c47bdd680009b11c9ac382163e05ca43baf4127954c5f6d0250e7d772d2b80c",
+                "sha256:6e949a8a94186bced05b6508faa61b7adacc911115664ccb1923b9ad1f1ccf7b",
+                "sha256:73c7a935e62033bd5e8f0da33a4dcb763da2361921a69a5a95aaf6c93aa03a87",
+                "sha256:76ad8484379695f3fe46228962017a7e1337e9acadafed67eb20aabb175df98b",
+                "sha256:8350d4055505412a426b6ad8c521bc7d367d1637a762c70fdd93a3a0d595990b",
+                "sha256:87e9df830022488e235dd601478c15ad73a0389628588ba0b028cb74eb72fed8",
+                "sha256:8f9a542c979df62098ae9c58b19e03ad3df1c9d8c6895d96c0d51da17b243b1c",
+                "sha256:8fec441f5adcf81dd240a5fe78e3d83767999771630b5ddfc5867827a34fa3d3",
+                "sha256:9a03e16e55465177d416699331b0f3564138f1807ecc5f2de9d55d8f188d08c7",
+                "sha256:ba30a896166f0fee83183cec913298151b73164160d965af2e93a20bbd2ab605",
+                "sha256:c17d98799f32e3f55f181f19dd2021d762eb38fdd381b4a748b9f5a36738e935",
+                "sha256:c522392acc5e962bcac3b22b9592493ffd06d1fc5d755954e6be9f4990de932b",
+                "sha256:d0f9bd1fd919134d459d8abf954f63886745f4660ef66480b9d753a7c9d40927",
+                "sha256:d18d7f18a47de6863cd480734613502904611730f8def45fc52a5d97503e5101",
+                "sha256:d31481ccf4694a8416b681544c23bd271f5a123162ab603c7d7d2dd7dd901a07",
+                "sha256:e3e7065cbdabe6183ab82199d7a4f6b3ba0a438c5a512a68559846ccb76a78ec",
+                "sha256:eed82cdf79cd7f0232e2fdc1ad05b06a5e102a43e331f7d041e5f0e0a34a51c4",
+                "sha256:f970663fa4f7e80401a7b0cbeec00fa801bf0287d93d48368fc3e6fa32716245",
+                "sha256:f9b2fdca47dc855516b2d66eef3c39f2672cbf7e7a42e7e67ad2cbfcd6ba107d"
             ],
-            "markers": "python_version >= '3.7'",
-            "version": "==3.0.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==4.0.0"
         }
     }
 }
diff --git a/README.rst b/README.rst
index 48fc70aa..f1588de0 100644
--- a/README.rst
+++ b/README.rst
@@ -1,6 +1,6 @@
 .. image:: https://raw.githubusercontent.com/apriha/snps/master/docs/images/snps_banner.png
 
-|ci| |codecov| |docs| |pypi| |python| |downloads| |black|
+|ci| |codecov| |docs| |pypi| |python| |downloads| |ruff|
 
 snps
 ====
@@ -269,6 +269,10 @@ Thanks to Mike Agostino, Padma Reddy, Kevin Arvai, `openSNP <https://opensnp.org
 ``snps`` incorporates code and concepts generated with the assistance of
 `OpenAI's <https://openai.com>`_ `ChatGPT <https://chat.openai.com>`_ (GPT-3.5). ✨
 
+License
+-------
+``snps`` is licensed under the `BSD 3-Clause License <https://github.com/apriha/snps/blob/master/LICENSE.txt>`_.
+
 .. https://github.com/rtfd/readthedocs.org/blob/master/docs/badges.rst
 .. |ci| image:: https://github.com/apriha/snps/actions/workflows/ci.yml/badge.svg?branch=master
    :target: https://github.com/apriha/snps/actions/workflows/ci.yml
@@ -282,5 +286,6 @@ Thanks to Mike Agostino, Padma Reddy, Kevin Arvai, `openSNP <https://opensnp.org
    :target: https://www.python.org
 .. |downloads| image:: https://pepy.tech/badge/snps
    :target: https://pepy.tech/project/snps
-.. |black| image:: https://img.shields.io/badge/code%20style-black-000000.svg
-   :target: https://github.com/psf/black
+.. |ruff| image:: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json
+   :target: https://github.com/astral-sh/ruff
+   :alt: Ruff
diff --git a/analysis/parse-opensnp-files/get_file.py b/analysis/parse-opensnp-files/get_file.py
index 0cd931df..6d1e31f1 100644
--- a/analysis/parse-opensnp-files/get_file.py
+++ b/analysis/parse-opensnp-files/get_file.py
@@ -1,9 +1,8 @@
-""" Get a file from the openSNP datadump for debugging. """
+"""Get a file from the openSNP datadump for debugging."""
 
 import os
 
 from atomicwrites import atomic_write
-
 from snps.resources import Resources
 from snps.utils import create_dir
 
diff --git a/analysis/parse-opensnp-files/parse_opensnp_files.py b/analysis/parse-opensnp-files/parse_opensnp_files.py
index c2bb56b4..ab35c21c 100644
--- a/analysis/parse-opensnp-files/parse_opensnp_files.py
+++ b/analysis/parse-opensnp-files/parse_opensnp_files.py
@@ -1,21 +1,21 @@
-""" Parse openSNP datadump files.
+"""Parse openSNP datadump files.
 
 Attempt to parse each file in the openSNP datadump. For files where SNPs were loaded,
 save summary statistics to a dataframe and output as a CSV. For files where no SNPs were
 loaded, save a message for each file indicating the issue and optionally extract these
 files from the datadump for debugging.
+
 """
 
 import logging
 import os
 import random
 
-from atomicwrites import atomic_write
 import pandas as pd
-
+from atomicwrites import atomic_write
 from snps import SNPs
 from snps.resources import Resources
-from snps.utils import Parallelizer, save_df_as_csv, create_dir, clean_str
+from snps.utils import Parallelizer, clean_str, create_dir, save_df_as_csv
 
 OUTPUT_DIR = "output"
 EXTRACT_FILES = True
diff --git a/analysis/xy-chrom-snp-ratios/xy-chrom-snp-ratios.py b/analysis/xy-chrom-snp-ratios/xy-chrom-snp-ratios.py
index bf8322df..36fcf870 100644
--- a/analysis/xy-chrom-snp-ratios/xy-chrom-snp-ratios.py
+++ b/analysis/xy-chrom-snp-ratios/xy-chrom-snp-ratios.py
@@ -2,15 +2,14 @@
 import os
 import random
 
-from atomicwrites import atomic_write
-import numpy as np
-from matplotlib import patches
 import matplotlib.pyplot as plt
+import numpy as np
 import pandas as pd
-
+from atomicwrites import atomic_write
+from matplotlib import patches
 from snps import SNPs
 from snps.resources import Resources
-from snps.utils import Parallelizer, save_df_as_csv, create_dir
+from snps.utils import Parallelizer, create_dir, save_df_as_csv
 
 OUTPUT_DIR = "output"
 
diff --git a/docs/conf.py b/docs/conf.py
index 31f3988b..33865a9f 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -20,6 +20,8 @@
 import os
 import sys
 
+import snps
+
 # http://docs.readthedocs.io/en/latest/faq.html#i-get-import-errors-on-libraries-that-depend-on-c-modules
 autodoc_mock_imports = [
     "numpy",
@@ -31,8 +33,6 @@
 
 sys.path.insert(0, os.path.abspath("../"))
 
-import snps
-
 # https://samnicholls.net/2016/06/15/how-to-sphinx-readthedocs/
 
 # -- General configuration ------------------------------------------------
diff --git a/pyproject.toml b/pyproject.toml
index b0471b7f..cb8028f3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,3 +1,7 @@
 [build-system]
 requires = ["setuptools", "wheel"]
-build-backend = "setuptools.build_meta:__legacy__"
\ No newline at end of file
+build-backend = "setuptools.build_meta:__legacy__"
+
+# https://github.com/astral-sh/ruff/issues/465#issuecomment-1783684428
+[tool.ruff.lint]
+extend-select = ["I"]
diff --git a/setup.py b/setup.py
index beee946c..e9746617 100644
--- a/setup.py
+++ b/setup.py
@@ -1,3 +1,23 @@
+# Copyright (c) 2016 The Python Packaging Authority (PyPA)
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy of
+# this software and associated documentation files (the "Software"), to deal in
+# the Software without restriction, including without limitation the rights to
+# use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+# of the Software, and to permit persons to whom the Software is furnished to do
+# so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+
 """A setuptools based setup module.
 
 See:
@@ -6,73 +26,12 @@
 
 """
 
-"""
-Copyright (c) 2016 The Python Packaging Authority (PyPA)
-
-Permission is hereby granted, free of charge, to any person obtaining a copy of
-this software and associated documentation files (the "Software"), to deal in
-the Software without restriction, including without limitation the rights to
-use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
-of the Software, and to permit persons to whom the Software is furnished to do
-so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
-
-"""
-
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 # To use a consistent encoding
 from codecs import open
 from glob import glob
-from os.path import abspath
-from os.path import basename
-from os.path import dirname
-from os.path import join
-from os.path import splitext
+from os.path import abspath, basename, dirname, join, splitext
 
-from setuptools import find_packages
-from setuptools import setup
+from setuptools import find_packages, setup
 
 import versioneer
 
diff --git a/src/snps/__init__.py b/src/snps/__init__.py
index 01681d72..3cfce991 100644
--- a/src/snps/__init__.py
+++ b/src/snps/__init__.py
@@ -1,43 +1,10 @@
-""" `snps`
+"""`snps`
 
 tools for reading, writing, merging, and remapping SNPs
 
 """
 
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
-from snps.snps import SNPs
+from snps.snps import SNPs as SNPs
 
 # set version string with Versioneer
 from . import _version
diff --git a/src/snps/_version.py b/src/snps/_version.py
index 7c177a34..85f78e10 100644
--- a/src/snps/_version.py
+++ b/src/snps/_version.py
@@ -11,12 +11,12 @@
 """Git implementation of _version.py."""
 
 import errno
+import functools
 import os
 import re
 import subprocess
 import sys
 from typing import Any, Callable, Dict, List, Optional, Tuple
-import functools
 
 
 def get_keywords() -> Dict[str, str]:
diff --git a/src/snps/ensembl.py b/src/snps/ensembl.py
index 46248677..7b94f4e1 100644
--- a/src/snps/ensembl.py
+++ b/src/snps/ensembl.py
@@ -1,4 +1,19 @@
-""" Ensembl REST client.
+# Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
+# Copyright [2016-2017] EMBL-European Bioinformatics Institute
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+"""Ensembl REST client.
 
 Notes
 -----
@@ -12,56 +27,6 @@
 
 """
 
-"""
-Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-Copyright [2016-2017] EMBL-European Bioinformatics Institute
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-
-"""
-
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import json
 import sys
 import time
diff --git a/src/snps/io/__init__.py b/src/snps/io/__init__.py
index 89f41997..455b39e9 100644
--- a/src/snps/io/__init__.py
+++ b/src/snps/io/__init__.py
@@ -1,38 +1,5 @@
-""" Classes for reading and writing SNPs. """
+"""Classes for reading and writing SNPs."""
 
-"""
-BSD 3-Clause License
-
-Copyright (c) 2020, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
-
-from .reader import Reader, get_empty_snps_dataframe
-from .writer import Writer
+from .reader import Reader as Reader
+from .reader import get_empty_snps_dataframe as get_empty_snps_dataframe
+from .writer import Writer as Writer
diff --git a/src/snps/io/reader.py b/src/snps/io/reader.py
index f3047b86..10dc2bac 100644
--- a/src/snps/io/reader.py
+++ b/src/snps/io/reader.py
@@ -1,42 +1,6 @@
-""" Class for reading SNPs.
-
-"""
-
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
+"""Class for reading SNPs."""
 
 import binascii
-from copy import deepcopy
 import gzip
 import io
 import logging
@@ -45,11 +9,11 @@
 import warnings
 import zipfile
 import zlib
+from copy import deepcopy
 
 import numpy as np
 import pandas as pd
 
-
 logger = logging.getLogger(__name__)
 
 NORMALIZED_DTYPES = {
diff --git a/src/snps/io/writer.py b/src/snps/io/writer.py
index 98ae7a88..8a2a784a 100644
--- a/src/snps/io/writer.py
+++ b/src/snps/io/writer.py
@@ -1,41 +1,5 @@
-""" Class for writing SNPs.
+"""Class for writing SNPs."""
 
-"""
-
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
-import datetime
 import logging
 import warnings
 
@@ -44,7 +8,7 @@
 
 import snps
 from snps.io import get_empty_snps_dataframe
-from snps.utils import save_df_as_csv, clean_str, get_utc_now
+from snps.utils import clean_str, get_utc_now, save_df_as_csv
 
 logger = logging.getLogger(__name__)
 
diff --git a/src/snps/resources.py b/src/snps/resources.py
index 36181239..ac41bd23 100644
--- a/src/snps/resources.py
+++ b/src/snps/resources.py
@@ -1,4 +1,4 @@
-""" Class for downloading and loading required external resources.
+"""Class for downloading and loading required external resources.
 
 References
 ----------
@@ -13,39 +13,6 @@
 
 """
 
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import gzip
 import hashlib
 import itertools
@@ -59,12 +26,12 @@
 import urllib.request
 import zipfile
 
-from atomicwrites import atomic_write
 import numpy as np
 import pandas as pd
+from atomicwrites import atomic_write
 
 from snps.ensembl import EnsemblRestClient
-from snps.utils import create_dir, Singleton
+from snps.utils import Singleton, create_dir
 
 logger = logging.getLogger(__name__)
 
diff --git a/src/snps/snps.py b/src/snps/snps.py
index 5c4b8805..801f5e42 100644
--- a/src/snps/snps.py
+++ b/src/snps/snps.py
@@ -1,54 +1,19 @@
-""" ``SNPs`` reads, writes, merges, and remaps genotype / raw data files.
-
-"""
-
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
+"""``SNPs`` reads, writes, merges, and remaps genotype / raw data files."""
 
 import copy
-from itertools import groupby, count
 import logging
 import os
 import re
 import warnings
+from itertools import count, groupby
 
 import numpy as np
 import pandas as pd
 from pandas.api.types import CategoricalDtype
 
 from snps.ensembl import EnsemblRestClient
-from snps.resources import Resources
 from snps.io import Reader, Writer, get_empty_snps_dataframe
+from snps.resources import Resources
 from snps.utils import Parallelizer
 
 logger = logging.getLogger(__name__)
@@ -474,11 +439,11 @@ def chromosomes_summary(self):
 
             # https://codereview.stackexchange.com/a/5202
             def as_range(iterable):
-                l = list(iterable)
-                if len(l) > 1:
-                    return f"{l[0]}-{l[-1]}"
+                list_items = list(iterable)
+                if len(list_items) > 1:
+                    return f"{list_items[0]}-{list_items[-1]}"
                 else:
-                    return f"{l[0]}"
+                    return f"{list_items[0]}"
 
             # create str representations
             int_chroms = ", ".join(
@@ -967,7 +932,7 @@ def detect_build(self):
         def lookup_build_with_snp_pos(pos, s):
             try:
                 return int(s.loc[s == pos].index[0])
-            except:
+            except Exception:
                 return 0
 
         build = 0
diff --git a/src/snps/utils.py b/src/snps/utils.py
index b1f9133a..4ca2b976 100644
--- a/src/snps/utils.py
+++ b/src/snps/utils.py
@@ -1,53 +1,18 @@
-""" Utility classes and functions.
-
-"""
-
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
+"""Utility classes and functions."""
 
 import datetime
 import gzip
 import io
 import logging
-from multiprocessing import Pool
 import os
 import re
 import shutil
 import tempfile
 import zipfile
+from multiprocessing import Pool
 
-from atomicwrites import atomic_write
 import pandas as pd
+from atomicwrites import atomic_write
 
 import snps
 
diff --git a/tests/__init__.py b/tests/__init__.py
index e01de6f9..41406783 100644
--- a/tests/__init__.py
+++ b/tests/__init__.py
@@ -1,46 +1,12 @@
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import os
 import shutil
 import tempfile
 from unittest import TestCase
-from unittest.mock import Mock, patch, PropertyMock
+from unittest.mock import Mock, PropertyMock, patch
 
 import numpy as np
 import pandas as pd
 from pandas.api.types import is_object_dtype, is_unsigned_integer_dtype
-
 from snps import SNPs
 from snps.utils import gzip_file, zip_file
 
diff --git a/tests/io/test_reader.py b/tests/io/test_reader.py
index 033792a5..cf58df3d 100644
--- a/tests/io/test_reader.py
+++ b/tests/io/test_reader.py
@@ -1,43 +1,10 @@
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import os
 import tempfile
 
 from atomicwrites import atomic_write
-
 from snps.resources import Resources
 from snps.utils import gzip_file
+
 from tests import BaseSNPsTestCase
 
 
diff --git a/tests/io/test_writer.py b/tests/io/test_writer.py
index 48bd0c3c..b3d4b244 100755
--- a/tests/io/test_writer.py
+++ b/tests/io/test_writer.py
@@ -1,45 +1,12 @@
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import os
 import tempfile
 
 import numpy as np
 import pandas as pd
-
 from snps import SNPs
-from snps.resources import Resources, ReferenceSequence
+from snps.resources import ReferenceSequence, Resources
 from snps.utils import gzip_file
+
 from tests import BaseSNPsTestCase
 
 
diff --git a/tests/test_resources.py b/tests/test_resources.py
index 72216800..944cebc2 100644
--- a/tests/test_resources.py
+++ b/tests/test_resources.py
@@ -1,52 +1,19 @@
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import gzip
 import os
 import socket
 import tempfile
-from unittest.mock import Mock, mock_open, patch
 import urllib.error
 import warnings
 import zipfile
+from unittest.mock import Mock, mock_open, patch
 
-from atomicwrites import atomic_write
 import numpy as np
 import pandas as pd
-
+from atomicwrites import atomic_write
 from snps import SNPs
-from snps.resources import Resources, ReferenceSequence
+from snps.resources import ReferenceSequence, Resources
 from snps.utils import gzip_file
+
 from tests import BaseSNPsTestCase
 
 
diff --git a/tests/test_snps.py b/tests/test_snps.py
index 79250527..cffe3430 100755
--- a/tests/test_snps.py
+++ b/tests/test_snps.py
@@ -1,50 +1,17 @@
-"""
-BSD 3-Clause License
-
-Copyright (c) 2019, Andrew Riha
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-"""
-
 import importlib.util
 import io
 import logging
 import os
 import sys
 import tempfile
-from unittest.mock import Mock, patch
 import warnings
+from unittest.mock import Mock, patch
 
 import numpy as np
 import pandas as pd
-
 from snps import SNPs
 from snps.io import get_empty_snps_dataframe
+
 from tests import BaseSNPsTestCase
 
 
@@ -984,12 +951,12 @@ def test_merging_files_discrepant_snps(self):
 
             pd.testing.assert_index_equal(
                 s.discrepant_merge_positions.index,
-                expected.loc[expected["discrepant_position"] == True].index,
+                expected.loc[expected["discrepant_position"]].index,
             )
 
             pd.testing.assert_index_equal(
                 s.discrepant_merge_genotypes.index,
-                expected.loc[expected["discrepant_genotype"] == True].index,
+                expected.loc[expected["discrepant_genotype"]].index,
             )
 
             pd.testing.assert_series_equal(s.snps["pos"], expected["pos"])
diff --git a/versioneer.py b/versioneer.py
index de97d904..0d87ee51 100644
--- a/versioneer.py
+++ b/versioneer.py
@@ -309,15 +309,14 @@
 
 import configparser
 import errno
+import functools
 import json
 import os
 import re
 import subprocess
 import sys
 from pathlib import Path
-from typing import Any, Callable, cast, Dict, List, Optional, Tuple, Union
-from typing import NoReturn
-import functools
+from typing import Any, Callable, Dict, List, NoReturn, Optional, Tuple, Union, cast
 
 have_tomllib = True
 if sys.version_info >= (3, 11):
@@ -514,9 +513,7 @@ def run_command(
     return stdout, process.returncode
 
 
-LONG_VERSION_PY[
-    "git"
-] = r'''
+LONG_VERSION_PY["git"] = r'''
 # This file helps to compute a version number in source trees obtained from
 # git-archive tarball (such as those provided by githubs download-from-tag
 # feature). Distribution tarballs (built by setup.py sdist) and build