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genome file in bedpe_sort.py #351

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nitinra opened this issue Dec 17, 2020 · 0 comments
Closed

genome file in bedpe_sort.py #351

nitinra opened this issue Dec 17, 2020 · 0 comments

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@nitinra
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nitinra commented Dec 17, 2020

Hello,

I am trying to sort my bedpe file using the bedpe_sort.

Here is my command: ./bedpe_sort.py -b del.sample.nochr.bedpe -g genome.fasta > del.sample.nochr.posSorted.bedpe
However, the resulting file is empty. What format should the genome file be in for the script to run?
@nitinra nitinra closed this as completed Dec 18, 2020
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