aryana-aligner / src Public

The source code of the Aryana next generation sequencing (NGS) aligner

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
Downloads/src-maxplanck		Downloads/src-maxplanck
.gitignore		.gitignore
LICENSE		LICENSE
Makefile		Makefile
QSufSort.c		QSufSort.c
QSufSort.h		QSufSort.h
README.md		README.md
aligner.c		aligner.c
aligner.h		aligner.h
aryana_args.c		aryana_args.c
aryana_args.h		aryana_args.h
aryana_main.c		aryana_main.c
aryana_main.h		aryana_main.h
aryana_opts.h		aryana_opts.h
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwa2.c		bwa2.c
bwa2.h		bwa2.h
bwape.c		bwape.c
bwase.c		bwase.c
bwase.h		bwase.h
bwaseqio.c		bwaseqio.c
bwt.c		bwt.c
bwt.h		bwt.h
bwt_gen.c		bwt_gen.c
bwt_lite.c		bwt_lite.c
bwt_lite.h		bwt_lite.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtindex.c		bwtindex.c
bwtio.c		bwtio.c
bwtmisc.c		bwtmisc.c
bwtsw2.h		bwtsw2.h
bwtsw2_aux.c		bwtsw2_aux.c
bwtsw2_chain.c		bwtsw2_chain.c
bwtsw2_core.c		bwtsw2_core.c
bwtsw2_main.c		bwtsw2_main.c
bwtsw2_pair.c		bwtsw2_pair.c
cigar.c		cigar.c
cigars.c		cigars.c
cs2nt.c		cs2nt.c
fa2bin.c		fa2bin.c
fa2bin.h		fa2bin.h
fastmap.c		fastmap.c
hash.c		hash.c
hash.h		hash.h
is.c		is.c
kbwt.c		kbwt.c
kbwt.h		kbwt.h
khash.h		khash.h
kseq.h		kseq.h
ksort.h		ksort.h
kstring.c		kstring.c
kstring.h		kstring.h
ksw.c		ksw.c
ksw.h		ksw.h
kvec.h		kvec.h
main.c		main.c
main.h		main.h
sam.c		sam.c
sam.h		sam.h
simple_dp.c		simple_dp.c
smith.c		smith.c
smith.h		smith.h
stdaln.c		stdaln.c
stdaln.h		stdaln.h
utils.c		utils.c
utils.h		utils.h