ashiklom / edr-da Public

Testing of ED data assimilation

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Name		Name	Last commit message	Last commit date
Latest commit History 444 Commits
R		R
aviris		aviris
data-raw		data-raw
drake		drake
ed-inputs		ed-inputs
inst		inst
man		man
other_site_data		other_site_data
priors		priors
renv		renv
scripts		scripts
sites		sites
src		src
tests/testthat		tests/testthat
text		text
.Rbuildignore		.Rbuildignore
.Rprofile		.Rprofile
.dir-locals.el		.dir-locals.el
.gitignore		.gitignore
.here		.here
DESCRIPTION		DESCRIPTION
Makefile		Makefile
NAMESPACE		NAMESPACE
README.md		README.md
_drake.R		_drake.R
renv.lock		renv.lock

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Cutting out the middleman: Calibrating and validating a vegetation model using remotely sensed surface reflectance

Source code for the analysis and figures.

To reproduce the analysis for the GMD paper:

Clone this repository to your local machine.
Download the gmd-data.tar.gz file from OSF (https://osf.io/b6umf/) and extract its contents to the root of the edr-da repository. This should create the following folders: aviris, other_site_data.
Run the script scripts/inversion_r_multi_site.R to perform the multi-site calibration. Note that the exact inversion configuration is controlled by command line flags; the exact version requires the additional argument hetero. This script takes a long time, so you may want to run it on an HPC cluster.
Once (3) has finished, you can post-process the results by running make all. This will run the post-processing R drake workflow, and then build the manuscript PDF.