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Commits on Jul 20, 2022

• symlink to an actual version

  VorontsovIE

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  547f9cb

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• fix SNPScan --single-motif mode to accept a file with thresholds, not a folder

  VorontsovIE

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  e55358c

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Commits on Jul 18, 2022

• SNPScan now allows single motif input. Release v3.0.5

  VorontsovIE

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Commits on Apr 14, 2022

• Ignore bad files when loading motifs from folder. Version v3.0.4

  VorontsovIE

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Commits on Aug 30, 2020

• Added releases and note with a jar-file in a Readme

  VorontsovIE

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  e1d273f

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• Don't raise when PPM doesn't sum to 1.0, just warn

  VorontsovIE

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  8c5034c

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• better wording

  VorontsovIE

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  91a6c73

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Commits on Nov 1, 2017

• fix single motif extraction; first extract params then load motif

  VorontsovIE

  committed
  59f13e9

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Commits on Oct 23, 2017

• refactor readlines from file

  VorontsovIE

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• remove empty catch, add exception to method signatures

  VorontsovIE

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  0886468

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• unchecked assignment fix

  VorontsovIE

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  a1ee319

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Commits on Oct 22, 2017

• remove fallback to APE-calculation for macroape#ScanCollection and perfectosape

  VorontsovIE

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  62dd7ea

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• add --without-header option to perfectosape

  VorontsovIE

  committed
  3025275

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• more meaningful report about wrong precalculated thresholds folder in macroape#ScanCollection and perfectosape

  VorontsovIE

  committed
  d6866dc

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• bsearch now can accept not a folder with thresholds for a collection but a single file with thresholds for a single motif

  VorontsovIE

  committed
  860c086

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Commits on Oct 21, 2017

• PrecalculateThresholds now can calculate thresholds for a single motif

  VorontsovIE

  committed
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Commits on Oct 20, 2017

• PrecalculateThresholds now recursively created directory and reports an error if output folder can't be created

  VorontsovIE

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  bf48233

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• move PrecalculatorThreshold calculator initiation to a parent class

  VorontsovIE

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Commits on Oct 13, 2017

• EvalSimilarity help string for --position option was refined

  VorontsovIE

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• macroape EvalSimilarity now allows testing all positions on fixed strand

  VorontsovIE

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  57af1c7

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• maven lang level 1.6-->1.8

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Commits on Aug 18, 2017

• We should process option --extract-smth-from-stdin before actual extraction

  VorontsovIE

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Commits on Jun 8, 2017

• refactor BsearchList to use streams

  VorontsovIE

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• rename classes

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• rename classes

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Commits on Jun 7, 2017

• remove unnecessary caching

  VorontsovIE

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  6bb8bba

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• refactor

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  afbd706

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• refactor

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  b85881f

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• refactor

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  ea3cdca

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• refactor

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  438311f

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• refactor

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  1d020af

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• refactor

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  153c08e

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Commits on Jun 6, 2017

• small refactor

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  9a5089d

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• refactor PWMWithThresholds

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  fd8519b

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• refactor to remove SingleThresholdEvaluator layer and use CanFindThreshold directly

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