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Commits on Oct 25, 2016

• removes sseq from tests results as it is not required and blast+ diff

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• remove btop on test to allow for different versions of blast+

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  cd16903

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• corrects test to be compatible with blast+ 2.4.* and 2.5.*

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  ea7b8f7

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• update evalue to 1e-100 to avoid formating problems

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Commits on Oct 20, 2016

• update results files

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  8234c9b

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• change tblastn and tblastx queries to P450

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  7f6ce69

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• defaults to 2 process and corrects some validations

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  bb9c48c

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• improve on message errors

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  ca1e215

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Commits on Oct 11, 2016

• corrects option validation and removes some options from user.yml

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Commits on Sep 22, 2016

• forgot about adding folder

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  b054ed4

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• missed byebug -_-

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  c078b2a

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• could not use report.csv, as it has local path

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  d7b23a9

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• annotation dir is optional

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  e638c9d

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• wrong files copied.. oops

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  8fa7e54

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• corrects all tests and defines bootstrap as requirement

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  c8e2206

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• add rake to gemfile!

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  dddc269

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• reduces size of testing

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  2d0245b

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• remove byebug

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  c21d49a

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• removes byebug -_-

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  b8936c4

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• add testing script

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  6d5c4a6

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• adds warning when blast returns no hits

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Commits on Sep 21, 2016

• update tests

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• change fvesca to blackberry

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• validates configuration file

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  62b0456

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Commits on Sep 20, 2016

• update minimum codon to 120

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Commits on Jun 24, 2016

• update default options and correct bug

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  5508131

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• remove byebug expression that was not deleted

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  1e8b1ba

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• correction on tblastx engine

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  f57dbd6

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• logging improvements

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  2a34fbd

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• adds column in case there are alternative longest orf with same size

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  f11d73a

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• only save db fasta files and better logging

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• only save db fasta files and better logging

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  a094ae3

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Commits on Jun 3, 2016

• was counting 1 line if it was empty

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  c87527f

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Commits on May 23, 2016

• removes longest orf from aligned seq from results file

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• default option is for separate_db is true

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