Personal Cancer Genome Reporter (PCGR)

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Integrated Differential Expression and Pathway analysis

Microsatellite instability (MSI) detection for tumor only data.

Visualization and annotation of CNVs from population-scale whole-genome sequencing data

repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

my first R package just for testing

R package to work with ctDNA sequencing data

Plot CNV data with a genome viewer in R

MrMosaic (Genomic Mosaic Structural Variant Caller)

An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH

mesa package for Methylation Enrichment Sequencing Analysis

Multi-modal analysis of cell-free DNA for the early detection of cancer in Li-Fraumeni syndrome.

Analysis of cfDNA with nanopore sequencing

Genome wide, SV, CNV, SNV rainfall plots

R package to quantify allelic imbalances associated with homologous recombination deficiency in ovarian cancer. Use as input a list of segments per samples as those generated by ASCAT.