DeDRM tools for ebooks

Convert Machine Learning Code Between Frameworks

Open source code for AlphaFold 2.

Matplotlib styles for scientific plotting

AlphaFold 3 inference pipeline.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Graph Neural Networks with Keras and Tensorflow 2.

Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have differ…

Calibre plugin for ACSM->EPUB and ACSM->PDF conversion.

Working with molecular structures in pandas DataFrames

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

Scientific Inkscape: Inkscape extensions for figure resizing and editing

UniRep model, usage, and examples.

Protein Interface Prediction using Graph Convolutional Networks

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

Yet another LaTeX filter

python tools for TCR:peptide-MHC modeling and analysis

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

flexible CDR based distance metrics

Convert Obsidian vaults to collection of notes readable by Cosma and Zettlr

PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction prediction

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.

Tool for rapid clustering of antibody models by the structure of their CDRs.

ERGO is a deep learing based model for predicting TCR-peptide binding.

TEINet: a deep learning framework for prediction of TCR-epitope binding specificity

OpenChord is a Python library for creating chord diagrams.

Standardise TR/MH data