README.md

Documentation

• DeepVariant release notes

Quick start and Case studies

• DeepVariant quick start
• DeepVariant whole genome case study
• DeepVariant exome case study
• DeepVariant PacBio case study
• Best practices for multi-sample variant calling

(Advanced) Training

• Advanced Case Study: Train a customized SNP and small indel variant caller for BGISEQ-500 data
• DeepVariant training data

More details

• DeepVariant usage guide
• Building and testing DeepVariant
• DeepVariant Genomic VCF (gVCF) support
• Getting Started with GCP (It is not required to run DeepVariant on GCP.)
• VCF stats report

Colab notebooks

• Colab example: visualizing pileup images/tensors
• Can you beat DeepVariant?: A look inside the classification task
• Google Developer Codelab: Variant Calling on a Rice genome with DeepVariant