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12 stars written in Python
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Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

Python 858 245 Updated Jul 8, 2024

Python package for graph neural networks in chemistry and biology

Python 740 155 Updated Nov 1, 2023

Robust representation of semantically constrained graphs, in particular for molecules in chemistry

Python 707 127 Updated Jan 15, 2025

simpleT5 is built on top of PyTorch-lightning⚡️ and Transformers🤗 that lets you quickly train your T5 models.

Python 390 62 Updated May 19, 2023

add-on to plotly which show molecule images on mouseover!

Python 247 26 Updated Apr 10, 2024

Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology

Python 202 68 Updated Jul 6, 2023

ChEMBL database structure pipelines

Python 197 37 Updated Sep 3, 2024

Implementation of the method proposed in the paper "Efficient Multi-Objective Molecular Optimization in a Continuous Latent Space" by Robin Winter, Floriane Montanari, Andreas Steffen, Hans Briem, …

Python 76 21 Updated Apr 13, 2021

Supporting code for the paper «Generative molecular design in low data regimes»

Python 65 26 Updated Jun 22, 2021

Useful functions for working with small molecules

Python 42 5 Updated Jan 17, 2025

PyTorch-based Neural Graph Fingerprint for Organic Molecule Representations

Python 26 12 Updated Jul 31, 2020

Jupyter active learning annotator widget.

Python 22 5 Updated Dec 11, 2020