pyproject.toml

[build-system]
build-backend = "hatchling.build"
requires = ["hatchling", "hatch-vcs"]

[project]
name = "scprinter"
dynamic = ["version"]
description = "Multiscale footprints"
authors = [{ name = "Your Name", email = "you@example.com" }] # Add your details
license = { file = "LICENSE" } # Ensure you have a LICENSE file in your project root
readme = "README.md" # Ensure you have a README.md file or change to the correct file
keywords = [] # Add some keywords related to your project
requires-python = ">=3.8"
urls.Source = "https://github.com/ruochiz/scPrinter"
urls.Home-page = "https://github.com/ruochiz/scPrinter"
dependencies = [
    "numpy",
    "h5py",
    "pandas",
    "scipy",
    "bioframe",
    "torch",
    "pybedtools",
    "pyranges",
    "biopython",
    "MOODS-python",
    "snapATAC2",
    "plotly",
    "dna_features_viewer",
    "scanpy",
    "pyBigWig",
    "gffutils",
    "wandb",
    "logomaker",
    "shap"
]
[project.scripts]
seq2print_train = "scprinter.seq.scripts.seq2print_lora_train:main"
seq2print_attr = "scprinter.seq.scripts.evaluation_model:main"
seq2print_tfbs = "scprinter.seq.scripts.generate_TFBS_bigwig:main"
seq2print_delta = "scprinter.seq.scripts.motif_delta_effects:main"

[tool.black]
line-length = 100

[tool.isort]
line_length = 100
profile = "black"

[tool.hatch.version]
source = "vcs"