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Commits on Feb 6, 2025

• Merge pull request #5 from byee4/modify_delimiter

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  byee4

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  4212685

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• update README and env requirements

  byee4

  committed
  6264059

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• change delimiter of overlapping annotation from : -> ,

  byee4

  committed
  e269707

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Commits on Feb 3, 2025

• fix_return_highest_priority_feature

  

  Brian Yee

  committed
  4029fe1

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Commits on Feb 22, 2024

• add ucsc format

  

  Brian Yee

  committed
  a447f6d

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Commits on Nov 21, 2022

• update params --species -> --format

  byee4

  committed
  a4e2730

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Commits on Jan 15, 2021

• added three_prime_utr and five_prime_utr to priority so it doesnt get skipped over

  byee4

  committed
  287ed70

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• mostly adding support for new gtfs

  byee4

  committed
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Commits on Feb 5, 2020

• v0.0.14

  byee4

  committed
  4dbac3f

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Commits on Apr 5, 2019

• v0.0.13

  byee4

  committed
  5c542f7

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Commits on Sep 14, 2018

• 0.0.12

  byee4

  committed
  83d8028

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Commits on Aug 16, 2018

• added example priority files to datasets

  byee4

  committed
  64e18ae

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Commits on Jul 23, 2018

• changed priorities, added a separate miRNA category

  byee4

  committed
  cab1b60

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Commits on May 7, 2018

• added cwltool definitions and test

  byee4

  committed
  08a73e6

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Commits on Apr 2, 2018

• removed bug that makes filesizes explode

  byee4

  committed
  c694df0

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Commits on Mar 28, 2018

• 0.0.10

  

  Brian Yee

  committed
  a1854c3

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Commits on Mar 13, 2018

• added avg lengths calculator script

  

  Brian Yee

  committed
  aec69ee

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Commits on Jan 2, 2018

• added documentation in the README for miRNA_name2id and create_region_bedfiles scripts

  

  Brian Yee

  committed
  b393437

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• added documentation in the README for miRNA_name2id and create_region_bedfiles scripts

  

  Brian Yee

  committed
  503adc7

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Commits on Dec 16, 2017

• added proxdist intron classification

  

  Brian Yee

  committed
  5137dd9

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Commits on Dec 13, 2017

• reformatted and added new conversion scripts

  

  Brian Yee

  committed
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Commits on Oct 18, 2017

• added lab meeting slides

  

  Brian Yee

  committed
  3c323c2

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Commits on Oct 10, 2017

• added cwl tool

  

  Brian Yee

  committed
  9b67913

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Commits on Sep 25, 2017

• features within genic boundaries but not within any specific transcript is now intergenic

  

  Brian Yee

  committed
  71c52b8

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Commits on Sep 5, 2017

• added cwl wrapper

  

  Brian Yee

  committed
  9237f2f

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• cleaned up stuff, added environment files for py2.7 and py3.5

  

  Brian Yee

  committed
  6663976

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• small changes to README

  

  Brian Yee

  committed
  94c9164

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• added some intron tests

  

  Brian Yee

  committed
  29cbc08

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Commits on Sep 4, 2017

• fixed tests

  

  Brian Yee

  committed
  263e769

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• fixed tests

  

  Brian Yee

  committed
  f5e8504

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• fixed bug that was slowing down the main loop

  

  Brian Yee

  committed
  ca548b8

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Commits on Aug 24, 2017

• modified some tests - for now grant leniancy to tied transcripts

  

  Brian Yee

  committed
  c97d354

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• python3 compatibility

  

  Brian Yee

  committed
  3e97aac

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• python3 compatibility

  

  Brian Yee

  committed
  224d2a0

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Commits on Aug 23, 2017

• final python2 commit

  

  Brian Yee

  committed
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