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RIC-seq

Perl and bash scripts for analysis RIC-seq data

  1. samtools 0.1.19 should be used
  2. remove_duplicated_reads.pl or remove_duplicated_reads_SE.pl: remove PCR duplicates for single-end or paired-end reads.
  3. scripts for Monte Carlo simulation could be found at: https://github.com/StevenWingett/CloseCall (Jörg Morf et al, 2019).