Documentation

• DeepVariant release notes

Quick start and Case studies

• DeepVariant quick start
• DeepVariant whole genome case study
• DeepVariant exome case study

(Advanced) Training

• Advanced Case Study: Train a customized SNP and small indel variant caller for BGISEQ-500 data
• DeepVariant training data

More details

• DeepVariant usage guide
• Building and testing DeepVariant
• DeepVariant Genomic VCF (gVCF) support
• Getting Started with GCP (It is not required to run DeepVariant on GCP.)

Colab notebooks

• Colab example: visualizing pileup images/tensors
• Google Developer Codelab: Variant Calling on a Rice genome with DeepVariant