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Commits on Jul 28, 2023

• Update README.md

  cesarpomar

  committed
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• Portable string formatting with cinttypes and 32-bit architecture support.

  cesarpomar

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Commits on Jul 5, 2023

• Update README.md

  jcpichel

  authored
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Commits on Jul 4, 2023

• Fix error parsing stdin input

  cesarpomar

  committed
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Commits on Jul 3, 2023

• Updated robin-map and xxhash to newer versions, included them in the system libraries, and fixed CMakeLists

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Commits on Jun 28, 2023

• system libraries now include boost

  cesarpomar

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• Update README.md

  jcpichel

  authored
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Commits on Jun 26, 2023

• Updated readme

  cesarpomar

  committed
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• Option for linking system shared libraries and missing license.

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Commits on Jun 13, 2023

• README fix

  cesarpomar

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Commits on Jun 12, 2023

• ensure no nested parallelTraverse with verbose

  cesarpomar

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Commits on Jun 7, 2023

• cleaning up useless code and formating

  cesarpomar

  committed
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• install target and fix README

  cesarpomar

  committed
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Commits on Jun 2, 2023

• improved cli help

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Commits on May 31, 2023

• Clang Support, Disk Computing error details and fixes

  cesarpomar

  committed
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• enhanced 4.0 release notes

  cesarpomar

  committed
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• SPR fixes, Disk optimizations and tools folder

  cesarpomar

  committed
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Commits on May 18, 2023

• -disk-dynamic-limit parameter

  cesarpomar

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Commits on May 4, 2023

• disk computing improvements

  cesarpomar

  committed
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Commits on Apr 19, 2023

• SPR fixes and optimizations, CUDA support and minor changes.

  cesarpomar

  committed
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Commits on Mar 29, 2023

• GCC 10 alignment segfault fix, parallel compilation, Double precision run header, Warning fixes

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Commits on Mar 28, 2023

• Tree in can be read from NEXUS block tree.

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Commits on Mar 17, 2023

• optimizations and fixes

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Commits on Mar 11, 2023

• log and warnings

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Commits on Mar 8, 2023

• optimizeAllBranchLengths fix and progress shows absolute time restored (-relative-progress to use relative again)

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Commits on Mar 2, 2023

• visual studio warning fix and force omp_set_nested(0)

  cesarpomar

  committed
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• disk computing tested, upProfires are upProfiles are shared between threads to save memory and upProfile algorithms now use tree partitioning

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Commits on Feb 26, 2023

• - The code was rebranded for a major release as version 4.0

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Commits on Feb 10, 2023

• outProfile and profileDist new parallel implementation

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Commits on Feb 4, 2023

• removed g++ warning and nested parallel

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Commits on Feb 3, 2023

• Top hits log fix and parallel UniqueBestHits

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Commits on Jan 28, 2023

• Top hits parallel no longer requires additional memory so it is moved to level 0

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• Improved parallel Top hits to be at level 1. std::vector<bool> was replaced by std::vector<int8_t> for thread safety and to prevent Segmentation Fault. Empty sequence strings were removed as they a…

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Commits on Jan 27, 2023

• Non-deterministic mode no longer uses mutex. Top hits, TopHitNJSearch, and FastNJSearch, ExhaustiveNJSearch(-slow) use threads. Optimization options check.

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Commits on Jan 20, 2023

• README consistency fix

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