12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Create, edit and display a journal article, entirely in GitHub

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

Bioinformatics Workbook repository

Data Carpentry workshop materials

Import qiime2 artifacts to R

🔬📚 Galaxy Tool wrappers

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

Official documents of the Open Bioinformatics Foundation

small RNA analysis from NGS data

Reproducible Analyses accompanying DADA2 + PacBio Manuscript

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Perl illustrated guts

Handy tools for Microbiome analysis in R

Standard operating procedures for H3ABionet data processing and analyses

2017 September Microbial Community Analysis Workshop

This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.

Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018

H3ABioNet Metagenomics Workflow

Repo Containing the Scripts, results, and report from the Accreditation Exercise by icipe H3ABioNet node.

DEPRECATED: This repository is now frozen - For the most recent version of these materials, see: https://github.com/data-lessons/introduction-genomics/blob/gh-pages/01-intro-to-dataset.md

Scala bindings for WDL

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.