Skip to content

Files

Latest commit

 

History

History

figures

Folders and files

NameName
Last commit message
Last commit date

parent directory

..
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

This is the code to calculate the SIFI using the 'myeloid' and 'retinopathy' sample datasets from the 'survival' package

library(survival)
source("../SIFI.R")

# Example 1: 'myeloid' dataset
sifi(myeloid[ , c("futime","death","trt")], plot_iteration = T, file_iteration = "myeloid_sifi_default.pdf")    # Default SIFI strategy
sifi_all(myeloid[ , c("futime","death","trt")], plot_iteration = T, file_prefix = "myeloid_sifi")      # All SIFI strategies

# Example 2: 'retinopathy' dataset
sifi(retinopathy[ , c("futime","status","laser")], treatment_arm = "argon", plot_iteration = T, file_iteration = "retinopathy_sifi_default_argon.pdf")    # Default SIFI strategy, define experimental arm
sifi(retinopathy[ , c("futime","status","laser")], treatment_arm = "xenon", plot_iteration = T, file_iteration = "retinopathy_sifi_default_xenon.pdf")    # Default SIFI strategy, define experimental arm
sifi(retinopathy[ , c("futime","status","laser")], plot_iteration = T, file_iteration = "retinopathy_sifi_default_agnostic.pdf")    # Default SIFI strategy, without defining experimental arm ('agnostically' choose 'xenon' as experimental in this case)
sifi_all(retinopathy[ , c("futime","status","laser")], plot_iteration = T, file_prefix = "retinopathy_sifi")    # All SIFI strategies

The figures generated can be found in this folder