Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Nov 23, 2021

• added R2 to _nam

  

  Yakir Reshef

  committed
  e82dd86

• bugfix for python 3.6

  

  Yakir Reshef

  committed
  ad12206

• fixed required python version

  

  Yakir Reshef

  committed
  fe07124

Commits on Nov 19, 2021

• incremented version num

  

  Yakir Reshef

  committed
  3c5e4bf

Commits on Nov 17, 2021

• Updated number of NAM-PCs retained to be the maximum of {10, or the K NAM-PCs to test in modeling, or 15% of N}, but no larger than number of samples (or samples with non-null attribute values)

  

  rumker

  committed
  d0e40e2

Commits on Sep 30, 2021

• pyproject.toml, based on immunogenomics#5

  

  Yakir Reshef

  committed
  d164259

• pyproject.toml, based on immunogenomics#5

  

  Yakir Reshef

  committed
  c75fdb9

• reverted _nam.py, no pseudocounts or var scaling

  

  Yakir Reshef

  committed
  21445b2

• Merge pull request immunogenomics#4 from milescsmith/versioning

  Show description for 17fb1a0
  yakirr

  authored
  17fb1a0

• stray single-quote, double quotes to single quotes

  yakirr

  authored
  9089f57

• made package requirements less recent

  yakirr

  authored
  517510d

Commits on Sep 29, 2021

• Update README.md

  yakirr

  authored
  0c419c5

Commits on Sep 28, 2021

• incremented version

  

  Yakir Reshef

  committed
  f664468

• demo tweaks, lrumker's violinplot function into cna

  

  Yakir Reshef

  committed
  9bc7db1

Commits on Sep 23, 2021

• Added per-neighborhood variance scaling inversely proportional to sample size prior to PCA of the NAM. Updated tutorial with table of contents.

  

  rumker

  committed
  eacfaf0

Commits on Sep 22, 2021

• Updated tutorial to remove erroneous output.

  

  rumker

  committed
  5a20a7a

• Merge branch 'master' of github.com:immunogenomics/cna

  

  rumker

  committed
  f6e21a5

• Added pseudocounts in NAM construction to address cells/sample biases. Updated tutorial.

  

  rumker

  committed
  4c9470f

Commits on Jul 26, 2021

• new pypi version

  

  Yakir Reshef

  committed
  8fd97cf

• bugfix

  

  Yakir Reshef

  committed
  59f40bc

• anndata version is str vs Version object

  

  Yakir Reshef

  committed
  290f77a

Commits on Jul 21, 2021

• Update README.md

  yakirr

  authored
  e6ce616

Commits on Jul 19, 2021

• no need for version.parse around anndata.__version

  

  Yakir Reshef

  committed
  1184dc8

• Merge pull request immunogenomics#3 from milescsmith/new_anndata

  Show description for 38e0615
  yakirr

  authored
  38e0615

Commits on Jul 16, 2021

• Update setup.py

  milescsmith

  authored
  5324167

• FEAT: add version requirements for parent modules

  milescsmith

  committed
  f6a9f3e

• Fix indenting

  Show description for f035f86
  milescsmith

  authored
  f035f86

• FIX: adjust diffuse_stepwise behavior for anndata version

  milescsmith

  committed
  8043c99

Commits on Jul 13, 2021

• umap_ncorr still plots if nothing passed FDR 5%

  

  Yakir Reshef

  committed
  0c59948

• removed todo (outdated)

  

  Yakir Reshef

  committed
  25c4689

Commits on Jul 1, 2021

• bugfix for caching empty batch information

  

  Yakir Reshef

  committed
  d32fa35

Commits on Jun 23, 2021

• added force_permute_all

  

  Yakir Reshef

  committed
  654db72

Commits on May 17, 2021

• updated demo

  

  Yakir Reshef

  committed
  cd872e7

Commits on May 14, 2021

• Update README.md

  yakirr

  authored
  2c8c626

Commits on May 5, 2021

• Update README.md

  yakirr

  authored
  09eaec9

Pagination

PreviousNext