Halvade, a mapreduce implementation of the best practice DNA-seq pipeline by Broad Institute.
To build Halvade run this command in the halvade folder:
> ant
To build the Halvade uploader tool run this command in the halvade_uploader_tool folder:
> ant
See the Halvade manual to get started.
This software is available under the GPLv3 license. The GATK provided in Halvade is for academic and non-profit research use only.