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gRandma

grandparentage inference


<<<<<<< HEAD Inference of relationships based on genetic markers, namely SNPs and microhaplotypes, but microsatellites are also possible
Main goal was originally grandparentage, now single parentage is also an option
Estimating assignment error rates by Monte Carlo, stratified Monte Carlo, and the occasional importance sampling

Inference of grandparentage based on genetic markers
Potentially some other relationships as well, but main goal is grandparentage
Written with mixed stock analyses in mind (i.e. descendants of multiple populations are mixed together at sampling)

b54f17d3db80c31ba33987e95f7bf5bb79dd1814 Current options:

  • "single-sided" grandparentage: a trio of grandchild + both maternal grandparents (or both paternal grandparents)
  • single parentage: a pair of parent + offspring

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