todo-list.txt

* make a user's preferences file for associate colors with clades. PROBLEM: how do we know in advance which clades will be selected?
* better error handling in the get_biomarkers() function
* galaxy integration (George)
* define a tree-structure for the taxonomy in order to: (1) optimized the variables managements; (2) write as output tree only the path fron root to leaf since GraPhlAn can derived the tree from a composite path;