DESCRIPTION

Type: Package
Package: MSstatsTMTPTM
Title: Post Translational Modification (PTM) Significance Analysis in shotgun 
        mass spectrometry-based proteomic experiments with tandem mass tag 
        (TMT) labeling
Version: 1.1.2
Date: 2020-09-28
Description: Tools for Post Translational Modification (PTM) and protein 
              significance analysis in shotgun mass spectrometry-based proteomic
              experiments with tandem mass tag (TMT) labeling. The functions in
              this package should be used after PTM/protein summarization. They
              can be used to both plot the summarized results and model the 
              summarized datasets.
Authors@R: c(person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = c("aut", "cre")),
            person("Ting", "Huang", email = "thuang0703@gmail.com", role=c("aut")),
            person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = c("aut")),
          	person("Meena", "Choi", email = "mnchoi67@gmail.com", role="aut"),
          	person("Tsung-Heng", "Tsai", email = "tsai.tsungheng@gmail.com", role = "aut"),
          	person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut"))
License: Artistic-2.0
Depends: R (>= 4.0)
Imports: dplyr, gridExtra, stringr, reshape2, stats, utils, 
          ggplot2, grDevices, graphics, MSstatsTMT, Rcpp
Suggests: 
    BiocStyle,
    knitr,
    rmarkdown,
    testthat,
    MSstats,
    covr
LinkingTo: Rcpp
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software, DifferentialExpression, 
           OneChannel, TwoChannel, Normalization, QualityControl
BugReports: https://github.com/Vitek-Lab/MSstatsTMTPTM/issues
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1