Applied Computational Genomics Course at UU: Spring 2020

What you need to process the Quarterly DepMap-Omics releases from Terra

A simple RNA-Seq differential gene expression pipeline using Nextflow

Here we address the global structure preservation by tSNE and UMAP

Here I explain the math behind UMAP and show how to program it from scratch in Python

Predicting Cell Health with Morphological Profiles

Graph based data integration with UMAP

A tool to identify strand asymmetries in genomic data