dhusmann
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Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
R package for extracting and visualizing mutational patterns in base substitution catalogues
Integrative pathway enrichment analysis of multivariate omics data
R package containing useful functions for mutational signature analysis
Easily install and load packages from the tidyomcis ecosystem
CAusal Reasoning for Network Identification with integer VALue programming in R
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length …
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
Classifying tumor types based on Whole Genome Sequencing (WGS) data
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosin…
DNA methylation studies of mammalian species
Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
A shiny-based web tool for interactive analysis of DepMap data
Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
R package for functionally scoring phosphorylation sites