From 3058d8405b3da8bbbc7ea02deacf322e3ebec3f1 Mon Sep 17 00:00:00 2001 From: reykajayasinghe Date: Thu, 4 Feb 2016 14:02:15 -0600 Subject: [PATCH 1/2] Edited README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 7de714e..1a85ce6 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,10 @@ # VariantQC +Reyka Jayasinghe (rjayasin@genome.wustl.edu) and Steven Foltz (sfoltz@genome.wustl.edu) Variant quality checking scripts. # How to run QC Main QC script is run using bsub_qc.sh, which initiates the main qc_pipeline.sh. The input to bsub_qc.sh is described in the file. -Reyka Jayasinghe (rjayasin@genome.wustl.edu) and Steven Foltz (sfoltz@genome.wustl.edu) -#The Variant QC script will go through the following steps: +#Steps: 1. Extract complex insertions and deletions from pindel output. 2. Identify somatic, germline, and loss of heterozygosity(loh) events. 3. Filter out low coverage sites (20 read min). From c099fffdd35980c88e4a53216aa9eb7751fd694e Mon Sep 17 00:00:00 2001 From: reykajayasinghe Date: Thu, 4 Feb 2016 14:03:33 -0600 Subject: [PATCH 2/2] Edited README --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 1a85ce6..0edb861 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # VariantQC -Reyka Jayasinghe (rjayasin@genome.wustl.edu) and Steven Foltz (sfoltz@genome.wustl.edu) Variant quality checking scripts. +Reyka Jayasinghe (rjayasin@genome.wustl.edu) and Steven Foltz (sfoltz@genome.wustl.edu). + # How to run QC Main QC script is run using bsub_qc.sh, which initiates the main qc_pipeline.sh. The input to bsub_qc.sh is described in the file.