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utils_psiicos

Collection of tools for matlab connectivity analyses and visualization

Getting Started

Prerequisites

OS

Installation script works only on LINUX. The only thing it does is adding utils_psiicos folder location to the MATLAB path. It can be easily done manually.

The rest is cross-platform

Packages

Some functions load data files from brainstorm protocols. No other packages are required

Installation

Linux

Installation effectively takes 2 steps:

  1. add utils_psiicos to MATLAB path
  2. download testing and simulations data

Make sure you have cURL and run the following

git clone https://github.com/dmalt/utils_psiicos.git && cd utils_psiicos && ./install.sh --sim-data --test-data && cd ..

Note that together with adding the package to MATLAB path it will download ~170M of data for testing and simulations.

If you don't have cURL or don't want to download the data right now, run

git clone https://github.com/dmalt/utils_psiicos.git && cd utils_psiicos && ./install.sh && cd ..

The data can be downloaded manually. To enable simulation download the following and move into utils_psiicos folder GLowRes.mat InputData4Simul.mat channel_vectorview306.mat

For tests download the archive test_data.tar and unpack it into utils_psiicos

Windows

Get the package by downloading .zip archive from github, extract the files and add path to package folder from inside MATLAB.

Testing and simulations data can be downloaded manually by the links above.

Testing the installation

To test the installation open matlab and run

run_ups_tests

It will list the functions being tested and report if there were some errors.

If the installation was succesful all the tests should pass.