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Commits on Aug 16, 2021

• Added control over verbosity

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• Now properly customizable for different input and search types via config file; can run without annoTable

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• fixed README to reflect proper nature of smRecSearch

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• added options to control forward and reverse search query types and algorithms

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• added additional options and defaults, moved defaults to click.option

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• added option to omit transtable

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Commits on Sep 13, 2020

• Atlantogenata Publication

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• prepare to merge

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• Input file

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• Input file

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• Ready for BioRxiv

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Commits on Sep 8, 2020

• Penultimate draft

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Commits on Jun 4, 2020

• New double-tree figures

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Commits on Jun 3, 2020

• Fixed Figures and converted to bookdown-based knitting, need to fix HTML and WORD outputs

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• Refactored figures and tables, fixed Figure 6, broke Figure 4&7.

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Commits on May 31, 2020

• Added Figure, fixed figures 0-5

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Commits on May 29, 2020

• Figure 2 corrected

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Commits on May 28, 2020

• Figure 1 corrected

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Commits on May 20, 2020

• first draft

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Commits on May 14, 2020

• additional figures, cleaned major errors, added completion warnings

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Commits on May 10, 2020

• first draft

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• Publication ready, testing done

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Commits on Nov 20, 2019

• added cluster.json

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• fixed RNA-seq pipeline

  

  Juan Manuel Vazquez

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Commits on Feb 21, 2019

• Initial commit of smRecSearch.

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