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SARSCoV2origins Public
Forked from plemey/SARSCoV2originsA repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins
F* UpdatedJun 26, 2020 -
artic-ncov2019 Public
Forked from artic-network/artic-ncov2019ARTIC nanopore protocol for nCoV2019 novel coronavirus
Creative Commons Attribution 4.0 International UpdatedJun 10, 2020 -
assembly Public
Forked from seattleflu/assemblyPipelines for assembling NGS data from Seattle flu study.
Jupyter Notebook UpdatedJun 9, 2020 -
SARS-CoV-2_Sequencing Public
Forked from CDCgov/SARS-CoV-2_SequencingA collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
Perl Apache License 2.0 UpdatedJun 8, 2020 -
SARS-CoV-2_Multi-PCR_v1.0 Public
Forked from MGI-tech-bioinformatics/SARS-CoV-2_Multi-PCR_v1.0SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
Perl UpdatedJun 8, 2020 -
covid-19-signal Public
Forked from jaleezyy/covid-19-signalFiles and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Python UpdatedJun 8, 2020 -
BioID Public
Forked from ArtPoon/BioIDSource files for online resources of Bioinformatics of Infectious Diseases course
HTML Creative Commons Attribution Share Alike 4.0 International UpdatedMay 21, 2020 -
covid-19-baits Public
Forked from jaleezyy/covid-19-baitsRelated files pertaining to a SARS-CoV-2 bait capture platform.
Python UpdatedMay 4, 2020 -
sars_cov_2 Public
Forked from davetang/sars_cov_2Bioinformatics analysis of SARS-CoV-2
HTML UpdatedApr 26, 2020 -
covid19 Public
Forked from pomber/covid19JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily
JavaScript UpdatedMar 28, 2020 -
MiCall-Lite Public
Forked from PoonLab/MiCall-LitePipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
Python GNU Affero General Public License v3.0 UpdatedMar 27, 2020 -
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irida_uploader_cl Public
Linux terminal version of irida_uploader
Python MIT License UpdatedNov 8, 2019 -
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NGS-pipeline Public
Forked from jmzeng1314/NGS-pipelineBy study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
Shell GNU General Public License v3.0 UpdatedDec 21, 2018 -
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qsub-scripts Public
Forked from Public-Health-Bioinformatics/routine-nanopore-processingShell GNU General Public License v3.0 UpdatedAug 10, 2018 -
influenza-analysis Public
Forked from dkoppstein/influenza-analysisWorkflow for analysing influenza viral 5' end sequencing data.
Python UpdatedJun 29, 2018 -
coding_for_big_data Public
Forked from bgruening/coding_for_big_dataX things you should take into consideration if you code for big data analysis
MIT License UpdatedMay 29, 2018 -
Galaxy-Pipeline Public
Forked from naturalis/Galaxy-PipelineWrappers, scripts and configuration files for running cluster and identification analysis on a Galaxy installation.
Shell UpdatedMay 18, 2018 -
Sequence-manipulation Public
Forked from josephhughes/Sequence-manipulationA range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
Perl UpdatedMay 11, 2018 -
NGScourse Public
Forked from NBISweden/NGScourseIntroduction to Bioinformatics Using NGS Data
HTML UpdatedMar 14, 2018 -
Flu-Prediction Public
Forked from RK900/Flu-PredictionPredicting Future Influenza Virus Sequences with Machine Learning
Python GNU General Public License v3.0 UpdatedFeb 11, 2018 -
nanopore-scripts Public
Forked from duanjunhyqswu/nanopore-scriptsVarious scripts and utilities for manipulation of nanopore data
Shell MIT License UpdatedDec 8, 2017 -
lyve-SET Public
Forked from lskatz/lyve-SETLYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations
Perl MIT License UpdatedNov 21, 2017 -