requirements.txt

anndata>=0.6.15
# matplotlib 3.1 causes an error in 3d scatter plots. Once solved the dependency can be updated (https://github.com/matplotlib/matplotlib/issues/14298)
matplotlib==3.0.*
pandas>=0.21
# scipy 1.3 version is not compatible with statsmodels. A new statsmodels release is expected to address the issue (https://github.com/statsmodels/statsmodels/issues/5759)
scipy==1.2.*
seaborn
h5py
tables
tqdm
# exclude buggy versions
scikit-learn >= 0.19.1, != 0.21.0, != 0.21.1
statsmodels
patsy
networkx
natsort
joblib
numba>=0.41.0
umap-learn>=0.3.0